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S. scrofa Gene: - ENSSSCG00000020671 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000020671
Name-
Description-
OrganismSus scrofa (pig)
Synonym(s)slc18a2
Orthologs(s)27 orthologs
Paralog(s)26 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000023oocyte
  • UBERON:0034919juvenile stage
2.14e3
  • 2.14e3
90.94
  • 90.94
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
7.32e3
  • 7.32e3
68.99
  • 68.99
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.33e4
  • 1.33e4
43.56
  • 43.56
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.33e4
  • 1.33e4
43.53
  • 43.53
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.38e4
  • 1.38e4
41.53
  • 41.53
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.38e4
  • 1.38e4
  • 1.54e4
  • 1.75e4
41.36
  • 41.36
  • 34.69
  • 25.96
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.43e4
  • 1.43e4
39.53
  • 39.53
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.43e4
  • 1.43e4
39.48
  • 39.48
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018685nursing stage
  • UBERON:0000113post-juvenile adult stage
1.48e4
  • 1.48e4
  • 1.49e4
37.45
  • 37.45
  • 36.82
AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.48e4
  • 1.48e4
37.06
  • 37.06
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.52e4
  • 1.52e4
  • 1.63e4
35.77
  • 35.77
  • 30.78
AEIR
  • AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.53e4
  • 1.53e4
35.27
  • 35.27
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.54e4
  • 1.54e4
34.53
  • 34.53
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.55e4
  • 1.55e4
34.24
  • 34.24
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.57e4
  • 1.57e4
33.29
  • 33.29
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.59e4
  • 1.59e4
  • 1.77e4
  • 1.84e4
  • 1.85e4
32.73
  • 32.73
  • 25.18
  • 22.07
  • 21.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.59e4
  • 1.59e4
32.41
  • 32.41
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
1.61e4
  • 1.61e4
31.87
  • 31.87
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.62e4
  • 1.62e4
31.47
  • 31.47
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.63e4
  • 1.63e4
  • 1.64e4
  • 1.66e4
  • 1.73e4
30.80
  • 30.80
  • 30.52
  • 29.81
  • 26.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.64e4
  • 1.64e4
30.58
  • 30.58
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
1.65e4
  • 1.65e4
29.99
  • 29.99
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.73e4
  • 1.73e4
26.66
  • 26.66
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.75e4
  • 1.75e4
  • 1.81e4
25.68
  • 25.68
  • 23.43
AEIR
  • AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
1.76e4
  • 1.76e4
25.38
  • 25.38
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.86e4
  • 1.86e4
21.13
  • 21.13
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
1.91e4
  • 1.91e4
  • 2.06e4
  • 2.06e4
18.94
  • 18.94
  • 12.74
  • 12.74
AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression
Bilateria24 species27 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000020671.

Paralogs (same species)

Cross-references

EnsemblENSSSCG00000020671
EMBLCU462856
Uniprot/SPTREMBLI3L5W2, I3L5W2_PIG

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