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S. scrofa Gene: SCARA3 - ENSSSCG00000020846 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000020846
NameSCARA3
Descriptionscavenger receptor class A member 3 [Source:HGNC Symbol;Acc:HGNC:19000]
OrganismSus scrofa (pig)
Synonym(s)apc7, csr, csr1, mslr1, msrl1
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
650
  • 650
97.25
  • 97.25
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
3.73e3
  • 3.73e3
84.18
  • 84.18
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
3.74e3
  • 3.74e3
84.15
  • 84.15
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0034919juvenile stage
3.86e3
  • 3.86e3
  • 5.97e3
  • 6.20e3
  • 6.81e3
83.66
  • 83.66
  • 74.69
  • 73.72
  • 71.15
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
3.92e3
  • 3.92e3
  • 1.16e4
83.39
  • 83.39
  • 50.85
AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0000113post-juvenile adult stage
4.04e3
  • 4.04e3
  • 7.03e3
  • 7.13e3
82.88
  • 82.88
  • 70.20
  • 69.78
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
4.33e3
  • 4.33e3
81.66
  • 81.66
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
4.34e3
  • 4.34e3
  • 8.33e3
  • 1.24e4
81.60
  • 81.60
  • 64.68
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
4.39e3
  • 4.39e3
  • 5.02e3
81.41
  • 81.41
  • 78.74
AEIR
  • AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
4.89e3
  • 4.89e3
79.30
  • 79.30
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
4.96e3
  • 4.96e3
78.99
  • 78.99
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
5.05e3
  • 5.05e3
78.58
  • 78.58
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
5.06e3
  • 5.06e3
  • 9.95e3
78.56
  • 78.56
  • 57.83
AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
5.33e3
  • 5.33e3
77.42
  • 77.42
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
5.43e3
  • 5.43e3
76.97
  • 76.97
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
5.88e3
  • 5.88e3
  • 7.67e3
  • 8.95e3
  • 9.09e3
  • 9.83e3
75.08
  • 75.08
  • 67.48
  • 62.05
  • 61.48
  • 58.34
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
6.27e3
  • 6.27e3
  • 8.94e3
73.43
  • 73.43
  • 62.12
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
7.30e3
  • 7.30e3
69.07
  • 69.07
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
7.85e3
  • 7.85e3
  • 8.43e3
  • 8.52e3
66.73
  • 66.73
  • 64.26
  • 63.90
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
8.31e3
  • 8.31e3
  • 9.65e3
  • 9.82e3
64.78
  • 64.78
  • 59.10
  • 58.37
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
8.78e3
  • 8.78e3
62.79
  • 62.79
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
9.33e3
  • 9.33e3
60.45
  • 60.45
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
9.70e3
  • 9.70e3
  • 1.14e4
  • 1.34e4
58.88
  • 58.88
  • 51.52
  • 43.24
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
9.75e3
  • 9.75e3
58.67
  • 58.67
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.04e4
  • 1.04e4
  • 1.30e4
  • 1.35e4
56.03
  • 56.03
  • 44.71
  • 42.75
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.06e4
  • 1.06e4
55.21
  • 55.21
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.07e4
  • 1.07e4
  • 1.12e4
54.53
  • 54.53
  • 52.37
AEIR
  • AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.15e4
  • 1.15e4
51.09
  • 51.09
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
1.16e4
  • 1.16e4
50.62
  • 50.62
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
1.17e4
  • 1.17e4
50.52
  • 50.52
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
1.22e4
  • 1.22e4
48.32
  • 48.32
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
1.30e4
  • 1.30e4
44.93
  • 44.93
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
1.30e4
  • 1.30e4
44.83
  • 44.83
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
1.32e4
  • 1.32e4
44.16
  • 44.16
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.37e4
  • 1.37e4
41.87
  • 41.87
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.40e4
  • 1.40e4
40.59
  • 40.59
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
1.44e4
  • 1.44e4
39.09
  • 39.09
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.51e4
  • 1.51e4
36.18
  • 36.18
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.67e4
  • 1.67e4
29.19
  • 29.19
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Mammalia13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000020846.

Cross-references

EnsemblENSSSCG00000020846 (SCARA3)
HGNCHGNC:19000 (SCARA3)
EMBLFP340201
Uniprot/SPTREMBLI3LPS0, I3LPS0_PIG

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