S. scrofa Gene: TPH2 - ENSSSCG00000021122 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000021122
NameTPH2
Descriptiontryptophan hydroxylase 2 [Source:HGNC Symbol;Acc:HGNC:20692]
OrganismSus scrofa (pig)
Synonym(s)flj37295, ntph

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
2.44e3
  • 2.44e3
89.52168
  • 89.52168
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
7.12e3
  • 7.12e3
69.37302
  • 69.37302
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
9.90e3
  • 9.90e3
57.43458
  • 57.43458
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0034919juvenile stage
1.25e4
  • 1.25e4
46.17171
  • 46.17171
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.61e4
  • 1.61e4
30.91087
  • 30.91087
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.64e4
  • 1.64e4
29.41358
  • 29.41358
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.77e4
  • 1.77e4
24.07639
  • 24.07639
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
1.79e4
  • 1.79e4
  • 1.82e4
23.10478
  • 23.10478
  • 21.82420
AEIR
  • AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.83e4
  • 1.83e4
21.27392
  • 21.27392
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EMBLCU457452, CU655910
EnsemblENSSSCG00000021122 (TPH2)
HGNCHGNC:20692 (TPH2)
Uniprot/SPTREMBLF1SH22, F1SH22_PIG

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