S. scrofa Gene: - ENSSSCG00000021132 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000021132
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)15 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
7.06e3
  • 7.06e3
  • 7.84e3
70.07
  • 70.07
  • 66.79
AEIR
  • AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0034919juvenile stage
8.78e3
  • 8.78e3
62.79
  • 62.79
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
9.11e3
  • 9.11e3
61.37
  • 61.37
AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
1.03e4
  • 1.03e4
56.46
  • 56.46
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.08e4
  • 1.08e4
54.06
  • 54.06
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0000112sexually immature stage
1.20e4
  • 1.20e4
  • 1.21e4
  • 1.22e4
  • 1.34e4
49.29
  • 49.29
  • 48.86
  • 48.18
  • 43.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.20e4
  • 1.20e4
48.98
  • 48.98
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.20e4
  • 1.20e4
  • 1.42e4
48.95
  • 48.95
  • 39.84
AEIR
  • AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
1.25e4
  • 1.25e4
46.90
  • 46.90
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
1.36e4
  • 1.36e4
42.19
  • 42.19
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.40e4
  • 1.40e4
40.86
  • 40.86
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.40e4
  • 1.40e4
40.64
  • 40.64
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.41e4
  • 1.41e4
  • 1.44e4
40.38
  • 40.38
  • 39.13
AEIR
  • AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.42e4
  • 1.42e4
39.94
  • 39.94
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.44e4
  • 1.44e4
39.16
  • 39.16
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.44e4
  • 1.44e4
39.10
  • 39.10
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.45e4
  • 1.45e4
38.73
  • 38.73
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018685nursing stage
1.50e4
  • 1.50e4
  • 1.56e4
36.43
  • 36.43
  • 33.73
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
1.52e4
  • 1.52e4
  • 1.65e4
35.62
  • 35.62
  • 30.25
AEIR
  • AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.52e4
  • 1.52e4
35.49
  • 35.49
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.53e4
  • 1.53e4
35.04
  • 35.04
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.64e4
  • 1.64e4
30.65
  • 30.65
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
1.71e4
  • 1.71e4
  • 1.75e4
27.55
  • 27.55
  • 25.65
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.77e4
  • 1.77e4
  • 1.79e4
24.87
  • 24.87
  • 24.18
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
1.78e4
  • 1.78e4
  • 1.82e4
  • 1.84e4
24.71
  • 24.71
  • 23.03
  • 22.08
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
1.78e4
  • 1.78e4
24.35
  • 24.35
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.88e4
  • 1.88e4
  • 2.06e4
20.12
  • 20.12
  • 12.74
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Mammalia12 species12 genesCompare expression
Amniota14 species14 genesCompare expression
Euteleostomi15 species15 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000021132.

Cross-references

EnsemblENSSSCG00000021132
EMBLFP236465
Uniprot/SPTREMBLI3L6B1, I3L6B1_PIG

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