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S. scrofa Gene: - ENSSSCG00000021333 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000021333
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)16 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018685nursing stage
3.03e3
  • 3.03e3
  • 4.46e3
87.18
  • 87.18
  • 81.11
AEIR
  • AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
3.15e3
  • 3.15e3
86.63
  • 86.63
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
3.52e3
  • 3.52e3
85.10
  • 85.10
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
3.90e3
  • 3.90e3
  • 5.14e3
  • 8.50e3
83.46
  • 83.46
  • 78.23
  • 63.96
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
4.53e3
  • 4.53e3
80.82
  • 80.82
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
5.02e3
  • 5.02e3
78.70
  • 78.70
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
5.21e3
  • 5.21e3
  • 7.07e3
77.90
  • 77.90
  • 70.05
AEIR
  • AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
5.54e3
  • 5.54e3
76.53
  • 76.53
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
5.92e3
  • 5.92e3
74.90
  • 74.90
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
6.12e3
  • 6.12e3
74.05
  • 74.05
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
7.01e3
  • 7.01e3
  • 7.77e3
  • 8.88e3
  • 1.07e4
  • 1.31e4
70.29
  • 70.29
  • 67.07
  • 62.38
  • 54.62
  • 44.35
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
7.36e3
  • 7.36e3
68.79
  • 68.79
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
7.41e3
  • 7.41e3
68.58
  • 68.58
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
8.17e3
  • 8.17e3
  • 9.51e3
65.38
  • 65.38
  • 59.67
AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
8.36e3
  • 8.36e3
  • 1.24e4
64.57
  • 64.57
  • 47.51
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
8.54e3
  • 8.54e3
  • 1.44e4
63.81
  • 63.81
  • 38.89
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
8.91e3
  • 8.91e3
  • 9.59e3
  • 1.57e4
62.23
  • 62.23
  • 59.35
  • 33.54
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
8.93e3
  • 8.93e3
62.15
  • 62.15
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
9.13e3
  • 9.13e3
  • 1.50e4
61.31
  • 61.31
  • 36.62
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
9.32e3
  • 9.32e3
60.52
  • 60.52
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
9.43e3
  • 9.43e3
60.02
  • 60.02
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
9.45e3
  • 9.45e3
59.94
  • 59.94
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
1.03e4
  • 1.03e4
56.43
  • 56.43
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
1.04e4
  • 1.04e4
  • 1.28e4
55.74
  • 55.74
  • 45.60
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
1.06e4
  • 1.06e4
  • 1.06e4
  • 1.11e4
  • 1.30e4
55.21
  • 55.21
  • 55.03
  • 53.01
  • 44.73
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.10e4
  • 1.10e4
53.56
  • 53.56
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
1.12e4
  • 1.12e4
52.74
  • 52.74
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
1.12e4
  • 1.12e4
52.68
  • 52.68
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.14e4
  • 1.14e4
51.84
  • 51.84
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.14e4
  • 1.14e4
51.56
  • 51.56
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
1.26e4
  • 1.26e4
46.77
  • 46.77
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
1.27e4
  • 1.27e4
46.18
  • 46.18
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.29e4
  • 1.29e4
45.48
  • 45.48
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
1.34e4
  • 1.34e4
43.17
  • 43.17
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
1.40e4
  • 1.40e4
40.48
  • 40.48
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Amniota14 species14 genesCompare expression
Tetrapoda15 species15 genesCompare expression
Euteleostomi16 species16 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000021333.

Cross-references

EnsemblENSSSCG00000021333
EMBLFP236339
Uniprot/SPTREMBLI3LSG7, I3LSG7_PIG

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