S. scrofa Gene: - ENSSSCG00000021390 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000021390
Name-
Description-
OrganismSus scrofa (pig)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
1.54e3
  • 1.54e3
  • 8.98e3
93.36850
  • 93.36850
  • 61.37302
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
2.27e3
  • 2.27e3
  • 5.78e3
90.24049
  • 90.24049
  • 75.14625
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
2.38e3
  • 2.38e3
89.76686
  • 89.76686
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
2.89e3
  • 2.89e3
87.57183
  • 87.57183
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
2.92e3
  • 2.92e3
  • 9.21e3
87.44937
  • 87.44937
  • 60.39659
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
3.84e3
  • 3.84e3
  • 5.46e3
  • 7.48e3
83.50452
  • 83.50452
  • 76.51841
  • 67.81228
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
4.12e3
  • 4.12e3
82.28566
  • 82.28566
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
4.39e3
  • 4.39e3
  • 1.16e4
81.10732
  • 81.10732
  • 49.94408
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0034919juvenile stage
4.52e3
  • 4.52e3
  • 5.17e3
  • 1.00e4
80.54560
  • 80.54560
  • 77.76157
  • 56.79280
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
4.62e3
  • 4.62e3
80.14982
  • 80.14982
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
4.92e3
  • 4.92e3
78.82381
  • 78.82381
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0034919juvenile stage
5.45e3
  • 5.45e3
  • 1.11e4
76.57609
  • 76.57609
  • 52.40451
AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
5.95e3
  • 5.95e3
74.39831
  • 74.39831
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
5.96e3
  • 5.96e3
74.37500
  • 74.37500
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
6.29e3
  • 6.29e3
72.94030
  • 72.94030
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
6.54e3
  • 6.54e3
  • 9.71e3
71.86855
  • 71.86855
  • 58.23297
AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
7.59e3
  • 7.59e3
67.35767
  • 67.35767
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
8.68e3
  • 8.68e3
62.65558
  • 62.65558
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
8.82e3
  • 8.82e3
62.05575
  • 62.05575
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
9.61e3
  • 9.61e3
58.68436
  • 58.68436
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
9.96e3
  • 9.96e3
57.17597
  • 57.17597
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0034919juvenile stage
1.02e4
  • 1.02e4
56.08224
  • 56.08224
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.09e4
  • 1.09e4
52.93242
  • 52.93242
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
1.13e4
  • 1.13e4
51.52860
  • 51.52860
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
1.13e4
  • 1.13e4
51.37547
  • 51.37547
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
1.14e4
  • 1.14e4
50.84102
  • 50.84102
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.15e4
  • 1.15e4
50.62633
  • 50.62633
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
1.15e4
  • 1.15e4
50.36274
  • 50.36274
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0034919juvenile stage
1.16e4
  • 1.16e4
49.90877
  • 49.90877
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0034919juvenile stage
1.17e4
  • 1.17e4
49.66376
  • 49.66376
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0034919juvenile stage
1.17e4
  • 1.17e4
49.49626
  • 49.49626
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
1.17e4
  • 1.17e4
49.48357
  • 49.48357
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
1.18e4
  • 1.18e4
49.16569
  • 49.16569
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
1.21e4
  • 1.21e4
47.99028
  • 47.99028
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
1.24e4
  • 1.24e4
46.56551
  • 46.56551
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
1.32e4
  • 1.32e4
43.35143
  • 43.35143
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
1.32e4
  • 1.32e4
43.23873
  • 43.23873
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EnsemblENSSSCG00000021390
Uniprot/SPTREMBLI3LNJ1, I3LNJ1_PIG

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