S. scrofa Gene: PRDM16 - ENSSSCG00000021490 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000021490
NamePRDM16
DescriptionPR domain containing 16 [Source:HGNC Symbol;Acc:HGNC:14000]
OrganismSus scrofa (pig)
Synonym(s)kiaa1675, mel1, mgc166915, pfm13

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002113kidney
  • UBERON:0000104life cycle
8.22e3
  • 8.22e3
59.28888
  • 59.28888
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.05e4
  • 1.05e4
48.16476
  • 48.16476
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
1.18e4
  • 1.18e4
41.66440
  • 41.66440
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
1.30e4
  • 1.30e4
35.67237
  • 35.67237
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.53e4
  • 1.53e4
24.22908
  • 24.22908
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
1.53e4
  • 1.53e4
24.16372
  • 24.16372
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EMBLFP102752, FP565391
EnsemblENSSSCG00000021490 (PRDM16)
HGNCHGNC:14000 (PRDM16)
Uniprot/SPTREMBLI3L9C5, I3L9C5_PIG

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