S. scrofa Gene: - ENSSSCG00000021663 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000021663
Name-
Description-
OrganismSus scrofa (pig)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000178blood
  • UBERON:0018685nursing stage
4.63e3
  • 4.63e3
80.07437
  • 80.07437
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
6.24e3
  • 6.24e3
73.14922
  • 73.14922
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
6.34e3
  • 6.34e3
72.72742
  • 72.72742
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
6.41e3
  • 6.41e3
  • 9.92e3
  • 1.00e4
72.44709
  • 72.44709
  • 57.31676
  • 57.00839
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
7.29e3
  • 7.29e3
  • 1.16e4
  • 1.18e4
68.62956
  • 68.62956
  • 50.03407
  • 49.22574
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
7.61e3
  • 7.61e3
  • 1.02e4
67.26321
  • 67.26321
  • 56.11666
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
8.36e3
  • 8.36e3
64.04852
  • 64.04852
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
8.39e3
  • 8.39e3
63.91380
  • 63.91380
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
8.64e3
  • 8.64e3
  • 1.51e4
62.84386
  • 62.84386
  • 35.02667
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
9.48e3
  • 9.48e3
59.21886
  • 59.21886
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
9.98e3
  • 9.98e3
  • 1.14e4
57.05867
  • 57.05867
  • 50.78286
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
1.03e4
  • 1.03e4
  • 1.06e4
55.88924
  • 55.88924
  • 54.33766
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.09e4
  • 1.09e4
53.06826
  • 53.06826
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0034919juvenile stage
1.10e4
  • 1.10e4
52.78734
  • 52.78734
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0034919juvenile stage
1.15e4
  • 1.15e4
50.69012
  • 50.69012
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
1.16e4
  • 1.16e4
50.31435
  • 50.31435
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
1.21e4
  • 1.21e4
47.76475
  • 47.76475
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0034919juvenile stage
1.23e4
  • 1.23e4
47.30299
  • 47.30299
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0034919juvenile stage
1.25e4
  • 1.25e4
46.33603
  • 46.33603
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
1.25e4
  • 1.25e4
46.30162
  • 46.30162
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
1.25e4
  • 1.25e4
46.23482
  • 46.23482
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
1.26e4
  • 1.26e4
45.62487
  • 45.62487
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
1.27e4
  • 1.27e4
45.35655
  • 45.35655
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.28e4
  • 1.28e4
45.04366
  • 45.04366
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
1.29e4
  • 1.29e4
44.71034
  • 44.71034
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
1.29e4
  • 1.29e4
44.65537
  • 44.65537
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
1.29e4
  • 1.29e4
44.54727
  • 44.54727
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
1.32e4
  • 1.32e4
43.21985
  • 43.21985
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
1.33e4
  • 1.33e4
42.67894
  • 42.67894
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
1.35e4
  • 1.35e4
41.99892
  • 41.99892
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.42e4
  • 1.42e4
38.87294
  • 38.87294
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.44e4
  • 1.44e4
37.92417
  • 37.92417
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
1.46e4
  • 1.46e4
37.23439
  • 37.23439
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
1.47e4
  • 1.47e4
36.85478
  • 36.85478
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.48e4
  • 1.48e4
36.33827
  • 36.33827
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
1.49e4
  • 1.49e4
35.89397
  • 35.89397
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
1.51e4
  • 1.51e4
34.89216
  • 34.89216
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EMBLCU856216
EnsemblENSSSCG00000021663
Uniprot/SPTREMBLI3LFR6, I3LFR6_PIG

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