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S. scrofa Gene: ITGB1BP2 - ENSSSCG00000022209 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000022209
NameITGB1BP2
Descriptionintegrin subunit beta 1 binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6154]
OrganismSus scrofa (pig)
Synonym(s)chordc3
Orthologs(s)16 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
470
  • 470
98.01
  • 98.01
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
485
  • 485
  • 506
  • 737
97.95
  • 97.95
  • 97.86
  • 96.88
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
590
  • 590
97.50
  • 97.50
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
602
  • 602
  • 606
  • 857
  • 1.63e3
  • 1.71e3
97.45
  • 97.45
  • 97.44
  • 96.37
  • 93.08
  • 92.78
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
769
  • 769
96.74
  • 96.74
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
1.01e3
  • 1.01e3
95.73
  • 95.73
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.17e3
  • 1.17e3
95.03
  • 95.03
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.73e3
  • 1.73e3
92.69
  • 92.69
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
6.90e3
  • 6.90e3
70.77
  • 70.77
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0034919juvenile stage
7.24e3
  • 7.24e3
69.32
  • 69.32
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
7.80e3
  • 7.80e3
66.95
  • 66.95
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
8.22e3
  • 8.22e3
65.16
  • 65.16
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
8.22e3
  • 8.22e3
65.15
  • 65.15
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
9.27e3
  • 9.27e3
60.69
  • 60.69
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
9.51e3
  • 9.51e3
59.67
  • 59.67
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
1.01e4
  • 1.01e4
57.35
  • 57.35
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
1.02e4
  • 1.02e4
  • 1.24e4
56.74
  • 56.74
  • 47.51
AEIR
  • AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
1.03e4
  • 1.03e4
56.47
  • 56.47
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
1.03e4
  • 1.03e4
56.15
  • 56.15
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
1.04e4
  • 1.04e4
  • 1.19e4
  • 1.28e4
55.78
  • 55.78
  • 49.42
  • 45.72
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0034919juvenile stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018685nursing stage
1.06e4
  • 1.06e4
  • 1.49e4
  • 1.53e4
54.90
  • 54.90
  • 36.82
  • 35.10
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.11e4
  • 1.11e4
  • 1.83e4
52.94
  • 52.94
  • 22.36
AEIR
  • AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
1.13e4
  • 1.13e4
52.13
  • 52.13
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
1.16e4
  • 1.16e4
50.92
  • 50.92
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.19e4
  • 1.19e4
49.66
  • 49.66
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
1.22e4
  • 1.22e4
48.13
  • 48.13
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.28e4
  • 1.28e4
45.72
  • 45.72
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
1.28e4
  • 1.28e4
  • 1.44e4
45.57
  • 45.57
  • 38.97
AEIR
  • AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
1.29e4
  • 1.29e4
45.38
  • 45.38
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.29e4
  • 1.29e4
45.29
  • 45.29
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.29e4
  • 1.29e4
  • 1.93e4
45.20
  • 45.20
  • 18.31
AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.30e4
  • 1.30e4
44.71
  • 44.71
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.31e4
  • 1.31e4
  • 1.62e4
  • 2.06e4
44.37
  • 44.37
  • 31.26
  • 12.74
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.32e4
  • 1.32e4
44.15
  • 44.15
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
1.32e4
  • 1.32e4
44.14
  • 44.14
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
1.33e4
  • 1.33e4
  • 1.50e4
43.46
  • 43.46
  • 36.40
AEIR
  • AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.34e4
  • 1.34e4
43.32
  • 43.32
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.39e4
  • 1.39e4
41.15
  • 41.15
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
1.40e4
  • 1.40e4
40.74
  • 40.74
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.40e4
  • 1.40e4
  • 1.57e4
40.55
  • 40.55
  • 33.26
AEIR
  • AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.43e4
  • 1.43e4
39.49
  • 39.49
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
1.61e4
  • 1.61e4
  • 1.64e4
  • 1.66e4
  • 1.69e4
31.70
  • 31.70
  • 30.31
  • 29.52
  • 28.35
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.65e4
  • 1.65e4
30.10
  • 30.10
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.80e4
  • 1.80e4
23.50
  • 23.50
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.82e4
  • 1.82e4
22.65
  • 22.65
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Amniota16 species16 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000022209.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Opisthokonta1 geneCompare expression

Paralogy information comes from OMA : ENSSSCG00000022209.

Cross-references

EnsemblENSSSCG00000022209 (ITGB1BP2)
HGNCHGNC:6154 (ITGB1BP2)
Uniprot/SPTREMBLI3LGH0, I3LGH0_PIG

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