S. scrofa Gene: COCH - ENSSSCG00000022679 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000022679
NameCOCH
Descriptioncochlin [Source:HGNC Symbol;Acc:HGNC:2180]
OrganismSus scrofa (pig)
Synonym(s)coch-5b2, dfna31, dfna9
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
274
  • 274
  • 1.26e4
98.84
  • 98.84
  • 46.66
AEIR
  • AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
1.96e3
  • 1.96e3
91.70
  • 91.70
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
2.36e3
  • 2.36e3
89.98
  • 89.98
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
2.89e3
  • 2.89e3
  • 3.51e3
  • 6.10e3
87.74
  • 87.74
  • 85.14
  • 74.14
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
3.61e3
  • 3.61e3
  • 6.77e3
84.72
  • 84.72
  • 71.29
AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
4.46e3
  • 4.46e3
81.09
  • 81.09
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
5.02e3
  • 5.02e3
  • 5.34e3
  • 6.09e3
  • 7.06e3
78.72
  • 78.72
  • 77.37
  • 74.18
  • 70.09
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
7.41e3
  • 7.41e3
68.60
  • 68.60
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0034919juvenile stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018685nursing stage
8.07e3
  • 8.07e3
  • 1.24e4
  • 1.50e4
65.79
  • 65.79
  • 47.29
  • 36.38
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
8.10e3
  • 8.10e3
65.66
  • 65.66
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
8.19e3
  • 8.19e3
65.30
  • 65.30
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
8.24e3
  • 8.24e3
65.08
  • 65.08
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
9.60e3
  • 9.60e3
59.30
  • 59.30
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
9.71e3
  • 9.71e3
58.83
  • 58.83
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
1.08e4
  • 1.08e4
54.07
  • 54.07
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
1.13e4
  • 1.13e4
52.04
  • 52.04
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.20e4
  • 1.20e4
49.15
  • 49.15
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.22e4
  • 1.22e4
48.25
  • 48.25
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
  • 1.67e4
47.51
  • 47.51
  • 29.02
AEIR
  • AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • UBERON:0018241prime adult stage
1.28e4
  • 1.28e4
  • 1.41e4
  • 1.59e4
  • 1.65e4
  • 1.73e4
45.79
  • 45.79
  • 40.40
  • 32.47
  • 30.12
  • 26.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.30e4
  • 1.30e4
  • 1.61e4
  • 1.80e4
45.04
  • 45.04
  • 31.77
  • 23.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
1.34e4
  • 1.34e4
43.18
  • 43.18
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.34e4
  • 1.34e4
  • 1.52e4
  • 1.64e4
43.15
  • 43.15
  • 35.59
  • 30.32
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
1.36e4
  • 1.36e4
42.20
  • 42.20
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.37e4
  • 1.37e4
42.11
  • 42.11
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.44e4
  • 1.44e4
38.94
  • 38.94
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
1.47e4
  • 1.47e4
  • 1.51e4
37.69
  • 37.69
  • 36.00
AEIR
  • AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.50e4
  • 1.50e4
36.52
  • 36.52
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
1.53e4
  • 1.53e4
35.12
  • 35.12
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.55e4
  • 1.55e4
34.43
  • 34.43
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.59e4
  • 1.59e4
32.49
  • 32.49
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.65e4
  • 1.65e4
30.03
  • 30.03
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.68e4
  • 1.68e4
28.60
  • 28.60
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.70e4
  • 1.70e4
28.14
  • 28.14
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
1.73e4
  • 1.73e4
26.83
  • 26.83
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.84e4
  • 1.84e4
  • 2.18e4
21.91
  • 21.91
  • 7.71
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.91e4
  • 1.91e4
18.88
  • 18.88
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species18 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000022679.

Cross-references

EnsemblENSSSCG00000022679 (COCH)
HGNCHGNC:2180 (COCH)
Uniprot/SPTREMBLI3LD22, I3LD22_PIG

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