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S. scrofa Gene: - ENSSSCG00000023540 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000023540
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)8 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
4.50e3
  • 4.50e3
  • 1.06e4
80.94
  • 80.94
  • 55.28
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
8.80e3
  • 8.80e3
  • 1.25e4
  • 1.42e4
62.72
  • 62.72
  • 47.19
  • 39.73
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
9.55e3
  • 9.55e3
59.52
  • 59.52
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
9.66e3
  • 9.66e3
  • 1.48e4
  • 1.72e4
  • 1.83e4
59.04
  • 59.04
  • 37.25
  • 26.97
  • 22.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
1.04e4
  • 1.04e4
  • 1.28e4
55.87
  • 55.87
  • 45.71
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.06e4
  • 1.06e4
  • 1.23e4
  • 1.83e4
54.90
  • 54.90
  • 47.95
  • 22.39
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.08e4
  • 1.08e4
  • 1.54e4
54.33
  • 54.33
  • 34.69
AEIR
  • AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
1.11e4
  • 1.11e4
52.99
  • 52.99
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.12e4
  • 1.12e4
  • 1.32e4
  • 1.86e4
52.48
  • 52.48
  • 43.89
  • 21.12
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.17e4
  • 1.17e4
50.55
  • 50.55
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
1.21e4
  • 1.21e4
  • 1.32e4
48.89
  • 48.89
  • 44.23
AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
1.23e4
  • 1.23e4
  • 1.24e4
47.94
  • 47.94
  • 47.51
AEIR
  • AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.23e4
  • 1.23e4
47.68
  • 47.68
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
1.27e4
  • 1.27e4
46.31
  • 46.31
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.28e4
  • 1.28e4
45.68
  • 45.68
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
1.35e4
  • 1.35e4
42.61
  • 42.61
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.37e4
  • 1.37e4
41.99
  • 41.99
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.37e4
  • 1.37e4
41.96
  • 41.96
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.38e4
  • 1.38e4
41.37
  • 41.37
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018685nursing stage
  • UBERON:0000113post-juvenile adult stage
1.40e4
  • 1.40e4
  • 1.74e4
40.58
  • 40.58
  • 26.29
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.46e4
  • 1.46e4
  • 1.48e4
  • 1.49e4
  • 1.92e4
38.01
  • 38.01
  • 37.31
  • 36.83
  • 18.68
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.49e4
  • 1.49e4
36.65
  • 36.65
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.50e4
  • 1.50e4
36.53
  • 36.53
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.53e4
  • 1.53e4
35.16
  • 35.16
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.54e4
  • 1.54e4
34.77
  • 34.77
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.55e4
  • 1.55e4
34.46
  • 34.46
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.62e4
  • 1.62e4
31.36
  • 31.36
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
1.74e4
  • 1.74e4
  • 2.06e4
  • 2.06e4
26.07
  • 26.07
  • 12.74
  • 12.74
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
1.76e4
  • 1.76e4
25.19
  • 25.19
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.80e4
  • 1.80e4
23.82
  • 23.82
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.89e4
  • 1.89e4
19.81
  • 19.81
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Orthology information comes from OMA : ENSSSCG00000023540.

Cross-references

EnsemblENSSSCG00000023540
EMBLFP236574
Uniprot/SPTREMBLI3LE65, I3LE65_PIG

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