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S. scrofa Gene: - ENSSSCG00000023661 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000023661
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)15 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0016540occipital cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
4.62e3
  • 4.62e3
  • 8.70e3
80.42
  • 80.42
  • 63.11
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
5.82e3
  • 5.82e3
  • 9.89e3
75.33
  • 75.33
  • 58.06
AEIR
  • AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
6.68e3
  • 6.68e3
71.68
  • 71.68
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
7.39e3
  • 7.39e3
  • 1.08e4
  • 1.25e4
  • 1.82e4
68.68
  • 68.68
  • 54.26
  • 46.92
  • 22.71
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
8.08e3
  • 8.08e3
65.75
  • 65.75
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
8.16e3
  • 8.16e3
65.42
  • 65.42
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
8.65e3
  • 8.65e3
63.35
  • 63.35
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
8.70e3
  • 8.70e3
63.13
  • 63.13
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.17e4
  • 1.17e4
50.53
  • 50.53
AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
1.24e4
  • 1.24e4
47.23
  • 47.23
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.26e4
  • 1.26e4
46.71
  • 46.71
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
1.28e4
  • 1.28e4
45.82
  • 45.82
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.37e4
  • 1.37e4
41.95
  • 41.95
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
1.83e4
  • 1.83e4
22.44
  • 22.44
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
1.86e4
  • 1.86e4
  • 2.06e4
  • 2.06e4
21.31
  • 21.31
  • 12.74
  • 12.74
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.89e4
  • 1.89e4
  • 2.18e4
19.70
  • 19.70
  • 7.71
AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.94e4
  • 1.94e4
17.74
  • 17.74
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.94e4
  • 1.94e4
17.62
  • 17.62
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.98e4
  • 1.98e4
16.27
  • 16.27
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.98e4
  • 1.98e4
15.96
  • 15.96
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
2.05e4
  • 2.05e4
13.20
  • 13.20
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Amniota13 species13 genesCompare expression
Tetrapoda14 species14 genesCompare expression
Euteleostomi15 species15 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000023661.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata3 genesCompare expression

Paralogy information comes from OMA : ENSSSCG00000023661.

Cross-references

EnsemblENSSSCG00000023661
EMBLCU928257
Uniprot/SPTREMBLI3LPL5, I3LPL5_PIG

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