S. scrofa Gene: TTR - ENSSSCG00000023686 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000023686
NameTTR
DescriptionTransthyretin [Source:UniProtKB/Swiss-Prot;Acc:P50390]
OrganismSus scrofa (pig)
Synonym(s)q2ia93
Orthologs(s)19 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
13.1
  • 13.1
  • 22.0
  • 26.0
99.95
  • 99.95
  • 99.91
  • 99.89
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
79.6
  • 79.6
99.67
  • 99.67
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
86.0
  • 86.0
99.64
  • 99.64
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
346
  • 346
98.54
  • 98.54
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
970
  • 970
  • 6.92e3
  • 1.31e4
95.89
  • 95.89
  • 70.66
  • 44.41
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
982
  • 982
95.84
  • 95.84
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.69e3
  • 1.69e3
92.84
  • 92.84
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
3.00e3
  • 3.00e3
87.27
  • 87.27
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
3.27e3
  • 3.27e3
86.15
  • 86.15
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
4.10e3
  • 4.10e3
82.62
  • 82.62
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
4.24e3
  • 4.24e3
82.04
  • 82.04
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
5.16e3
  • 5.16e3
  • 6.56e3
78.13
  • 78.13
  • 72.21
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
5.19e3
  • 5.19e3
77.98
  • 77.98
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
5.54e3
  • 5.54e3
  • 8.84e3
76.51
  • 76.51
  • 62.52
AEIR
  • AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
5.89e3
  • 5.89e3
75.03
  • 75.03
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
6.14e3
  • 6.14e3
73.98
  • 73.98
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
6.55e3
  • 6.55e3
72.23
  • 72.23
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
7.67e3
  • 7.67e3
  • 7.67e3
  • 1.26e4
  • 1.38e4
67.50
  • 67.50
  • 67.48
  • 46.55
  • 41.30
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
7.90e3
  • 7.90e3
  • 1.34e4
  • 1.49e4
  • 1.76e4
66.51
  • 66.51
  • 43.02
  • 36.66
  • 25.38
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.05e4
  • 1.05e4
55.50
  • 55.50
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.06e4
  • 1.06e4
  • 1.24e4
  • 1.34e4
55.14
  • 55.14
  • 47.51
  • 43.31
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.10e4
  • 1.10e4
  • 1.24e4
53.32
  • 53.32
  • 47.25
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
1.12e4
  • 1.12e4
  • 1.61e4
  • 1.72e4
52.72
  • 52.72
  • 31.92
  • 27.28
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
1.16e4
  • 1.16e4
50.64
  • 50.64
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
1.28e4
  • 1.28e4
  • 1.79e4
45.70
  • 45.70
  • 24.30
AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.30e4
  • 1.30e4
44.86
  • 44.86
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
1.31e4
  • 1.31e4
44.36
  • 44.36
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.54e4
  • 1.54e4
34.85
  • 34.85
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.71e4
  • 1.71e4
27.72
  • 27.72
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
1.74e4
  • 1.74e4
26.41
  • 26.41
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.87e4
  • 1.87e4
20.91
  • 20.91
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.92e4
  • 1.92e4
18.55
  • 18.55
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000023686.

Cross-references

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