S. scrofa Gene: VSX1 - ENSSSCG00000023887 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000023887
NameVSX1
Descriptionvisual system homeobox 1 [Source:HGNC Symbol;Acc:HGNC:12723]
OrganismSus scrofa (pig)
Synonym(s)ppcd, ppcd1, ppd
Orthologs(s)15 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
1.58e4
  • 1.58e4
  • 1.83e4
  • 1.89e4
  • 1.96e4
33.17
  • 33.17
  • 22.49
  • 20.06
  • 16.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
1.61e4
  • 1.61e4
31.93
  • 31.93
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.62e4
  • 1.62e4
31.48
  • 31.48
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.64e4
  • 1.64e4
30.42
  • 30.42
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
1.74e4
  • 1.74e4
  • 1.83e4
26.15
  • 26.15
  • 22.55
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Amniota14 species14 genesCompare expression
Tetrapoda15 species15 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000023887.

Cross-references

EnsemblENSSSCG00000023887 (VSX1)
HGNCHGNC:12723 (VSX1)
EMBLFP565328
Uniprot/SPTREMBLI3LGC8, I3LGC8_PIG

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