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S. scrofa Gene: - ENSSSCG00000023912 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000023912
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)17 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
2.65e3
  • 2.65e3
  • 8.69e3
88.79
  • 88.79
  • 63.15
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
3.11e3
  • 3.11e3
  • 3.18e3
  • 3.81e3
  • 5.28e3
86.81
  • 86.81
  • 86.54
  • 83.85
  • 77.62
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
3.19e3
  • 3.19e3
86.48
  • 86.48
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
3.43e3
  • 3.43e3
  • 6.27e3
  • 1.13e4
85.48
  • 85.48
  • 73.41
  • 51.92
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
3.75e3
  • 3.75e3
  • 9.86e3
84.12
  • 84.12
  • 58.20
AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
4.74e3
  • 4.74e3
79.92
  • 79.92
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
5.72e3
  • 5.72e3
  • 1.03e4
75.74
  • 75.74
  • 56.39
AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
5.76e3
  • 5.76e3
75.58
  • 75.58
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
6.02e3
  • 6.02e3
74.47
  • 74.47
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
6.79e3
  • 6.79e3
71.22
  • 71.22
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
6.94e3
  • 6.94e3
  • 1.05e4
  • 1.27e4
70.60
  • 70.60
  • 55.47
  • 46.33
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
7.22e3
  • 7.22e3
  • 7.69e3
69.41
  • 69.41
  • 67.40
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
8.25e3
  • 8.25e3
  • 1.01e4
65.05
  • 65.05
  • 57.38
AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
8.85e3
  • 8.85e3
62.49
  • 62.49
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
8.89e3
  • 8.89e3
62.32
  • 62.32
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
9.17e3
  • 9.17e3
  • 1.24e4
61.13
  • 61.13
  • 47.51
AEIR
  • AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
9.34e3
  • 9.34e3
60.43
  • 60.43
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0034919juvenile stage
9.60e3
  • 9.60e3
59.31
  • 59.31
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
9.60e3
  • 9.60e3
59.30
  • 59.30
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
9.71e3
  • 9.71e3
58.86
  • 58.86
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
9.73e3
  • 9.73e3
58.76
  • 58.76
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.00e4
  • 1.00e4
57.49
  • 57.49
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.01e4
  • 1.01e4
57.11
  • 57.11
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
1.02e4
  • 1.02e4
56.73
  • 56.73
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.03e4
  • 1.03e4
  • 1.28e4
  • 1.42e4
  • 1.44e4
  • 1.57e4
56.52
  • 56.52
  • 45.90
  • 39.60
  • 39.16
  • 33.51
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
1.06e4
  • 1.06e4
  • 1.33e4
54.87
  • 54.87
  • 43.43
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.07e4
  • 1.07e4
54.66
  • 54.66
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
1.09e4
  • 1.09e4
53.86
  • 53.86
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.11e4
  • 1.11e4
  • 1.19e4
  • 1.37e4
52.78
  • 52.78
  • 49.75
  • 41.97
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.12e4
  • 1.12e4
52.40
  • 52.40
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.15e4
  • 1.15e4
51.06
  • 51.06
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
1.19e4
  • 1.19e4
49.56
  • 49.56
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
1.21e4
  • 1.21e4
48.85
  • 48.85
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
1.21e4
  • 1.21e4
48.74
  • 48.74
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.23e4
  • 1.23e4
  • 1.41e4
  • 1.45e4
47.82
  • 47.82
  • 40.43
  • 38.57
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.27e4
  • 1.27e4
46.09
  • 46.09
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
1.38e4
  • 1.38e4
41.29
  • 41.29
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.44e4
  • 1.44e4
39.09
  • 39.09
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000023912.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression

Paralogy information comes from OMA : ENSSSCG00000023912.

Cross-references

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