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S. scrofa Gene: - ENSSSCG00000024408 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000024408
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)15 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000178blood
  • UBERON:0018685nursing stage
4.17e3
  • 4.17e3
82.34
  • 82.34
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
8.00e3
  • 8.00e3
66.08
  • 66.08
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
8.15e3
  • 8.15e3
  • 1.12e4
  • 1.17e4
65.45
  • 65.45
  • 52.57
  • 50.40
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
8.73e3
  • 8.73e3
62.99
  • 62.99
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.03e4
  • 1.03e4
  • 1.61e4
56.48
  • 56.48
  • 31.86
AEIR
  • AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
1.19e4
  • 1.19e4
49.73
  • 49.73
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
  • 1.65e4
47.51
  • 47.51
  • 29.99
AEIR
  • AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
1.37e4
  • 1.37e4
42.10
  • 42.10
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.62e4
  • 1.62e4
31.38
  • 31.38
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
1.62e4
  • 1.62e4
  • 1.79e4
31.26
  • 31.26
  • 24.05
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.64e4
  • 1.64e4
  • 1.77e4
  • 1.83e4
30.44
  • 30.44
  • 25.13
  • 22.48
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
1.65e4
  • 1.65e4
30.12
  • 30.12
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.65e4
  • 1.65e4
29.95
  • 29.95
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
1.75e4
  • 1.75e4
25.78
  • 25.78
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
1.84e4
  • 1.84e4
  • 1.89e4
  • 2.01e4
22.17
  • 22.17
  • 19.85
  • 14.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
1.84e4
  • 1.84e4
  • 2.06e4
  • 2.06e4
21.86
  • 21.86
  • 12.74
  • 12.74
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.84e4
  • 1.84e4
21.81
  • 21.81
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.85e4
  • 1.85e4
21.43
  • 21.43
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000024408.

Cross-references

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