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S. scrofa Gene: PRPF4 - ENSSSCG00000024648 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000024648
NamePRPF4
Descriptionpre-mRNA processing factor 4 [Source:HGNC Symbol;Acc:HGNC:17349]
OrganismSus scrofa (pig)
Synonym(s)hprp4, hprp4p, prp4, prp4p, snrnp60
Orthologs(s)26 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000023oocyte
  • UBERON:0034919juvenile stage
998
  • 998
95.78
  • 95.78
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
2.62e3
  • 2.62e3
88.90
  • 88.90
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
2.74e3
  • 2.74e3
88.38
  • 88.38
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
2.84e3
  • 2.84e3
87.97
  • 87.97
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
3.75e3
  • 3.75e3
  • 4.77e3
84.12
  • 84.12
  • 79.78
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
3.78e3
  • 3.78e3
  • 4.74e3
  • 6.17e3
83.96
  • 83.96
  • 79.92
  • 73.85
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
3.89e3
  • 3.89e3
  • 4.28e3
  • 5.65e3
83.53
  • 83.53
  • 81.87
  • 76.06
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
3.90e3
  • 3.90e3
83.46
  • 83.46
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
4.40e3
  • 4.40e3
81.37
  • 81.37
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
4.56e3
  • 4.56e3
  • 6.59e3
80.67
  • 80.67
  • 72.05
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
4.66e3
  • 4.66e3
  • 5.19e3
  • 5.91e3
80.23
  • 80.23
  • 78.00
  • 74.95
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
4.76e3
  • 4.76e3
79.82
  • 79.82
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
4.92e3
  • 4.92e3
  • 8.32e3
  • 1.24e4
79.14
  • 79.14
  • 64.74
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
5.00e3
  • 5.00e3
78.81
  • 78.81
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
5.04e3
  • 5.04e3
78.62
  • 78.62
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
5.09e3
  • 5.09e3
78.44
  • 78.44
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
5.14e3
  • 5.14e3
78.21
  • 78.21
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
5.19e3
  • 5.19e3
77.99
  • 77.99
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
5.29e3
  • 5.29e3
  • 5.70e3
  • 6.75e3
77.58
  • 77.58
  • 75.84
  • 71.37
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
5.46e3
  • 5.46e3
76.86
  • 76.86
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
5.76e3
  • 5.76e3
75.58
  • 75.58
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
6.00e3
  • 6.00e3
  • 6.05e3
  • 6.92e3
  • 7.20e3
  • 8.00e3
74.59
  • 74.59
  • 74.36
  • 70.65
  • 69.49
  • 66.11
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
6.10e3
  • 6.10e3
  • 6.26e3
74.16
  • 74.16
  • 73.45
AEIR
  • AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
6.11e3
  • 6.11e3
74.12
  • 74.12
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
6.22e3
  • 6.22e3
  • 7.08e3
  • 9.41e3
73.63
  • 73.63
  • 69.99
  • 60.12
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
6.38e3
  • 6.38e3
72.95
  • 72.95
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
6.67e3
  • 6.67e3
71.72
  • 71.72
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
6.75e3
  • 6.75e3
71.40
  • 71.40
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
6.79e3
  • 6.79e3
71.20
  • 71.20
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
6.85e3
  • 6.85e3
  • 6.96e3
  • 7.26e3
  • 8.52e3
70.98
  • 70.98
  • 70.48
  • 69.22
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
7.09e3
  • 7.09e3
69.96
  • 69.96
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
7.09e3
  • 7.09e3
69.93
  • 69.93
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
7.22e3
  • 7.22e3
69.39
  • 69.39
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
7.27e3
  • 7.27e3
  • 8.13e3
69.19
  • 69.19
  • 65.55
AEIR
  • AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
7.32e3
  • 7.32e3
68.96
  • 68.96
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
7.42e3
  • 7.42e3
  • 8.47e3
68.55
  • 68.55
  • 64.08
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
7.55e3
  • 7.55e3
  • 7.75e3
68.01
  • 68.01
  • 67.13
AEIR
  • AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
7.64e3
  • 7.64e3
67.61
  • 67.61
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
7.69e3
  • 7.69e3
67.39
  • 67.39
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
7.75e3
  • 7.75e3
67.15
  • 67.15
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
8.05e3
  • 8.05e3
65.90
  • 65.90
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
8.09e3
  • 8.09e3
65.69
  • 65.69
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
8.12e3
  • 8.12e3
65.57
  • 65.57
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
8.22e3
  • 8.22e3
65.14
  • 65.14
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
8.43e3
  • 8.43e3
64.26
  • 64.26
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
8.55e3
  • 8.55e3
63.76
  • 63.76
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
8.80e3
  • 8.80e3
62.70
  • 62.70
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
9.33e3
  • 9.33e3
60.45
  • 60.45
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression
Bilateria26 species26 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000024648.

Cross-references

EnsemblENSSSCG00000024648 (PRPF4)
HGNCHGNC:17349 (PRPF4)
EMBLFP339611
Uniprot/SPTREMBLI3LDL8, I3LDL8_PIG

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