S. scrofa Gene: - ENSSSCG00000025041 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000025041
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)21 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
4.43e3
  • 4.43e3
  • 1.01e4
  • 1.01e4
  • 1.04e4
  • 1.05e4
81.22
  • 81.22
  • 57.29
  • 57.12
  • 55.91
  • 55.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
4.66e3
  • 4.66e3
  • 5.18e3
80.26
  • 80.26
  • 78.04
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
4.75e3
  • 4.75e3
  • 4.88e3
  • 5.74e3
  • 6.44e3
79.89
  • 79.89
  • 79.31
  • 75.66
  • 72.71
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
5.58e3
  • 5.58e3
  • 6.86e3
  • 6.96e3
76.37
  • 76.37
  • 70.95
  • 70.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
5.69e3
  • 5.69e3
75.88
  • 75.88
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
6.08e3
  • 6.08e3
  • 6.95e3
74.21
  • 74.21
  • 70.56
AEIR
  • AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
6.11e3
  • 6.11e3
74.12
  • 74.12
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
6.36e3
  • 6.36e3
73.06
  • 73.06
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
6.58e3
  • 6.58e3
72.12
  • 72.12
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
6.68e3
  • 6.68e3
71.71
  • 71.71
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
6.69e3
  • 6.69e3
71.66
  • 71.66
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
6.70e3
  • 6.70e3
  • 7.98e3
  • 1.05e4
71.60
  • 71.60
  • 66.17
  • 55.65
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
6.79e3
  • 6.79e3
71.21
  • 71.21
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
6.87e3
  • 6.87e3
70.89
  • 70.89
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
6.89e3
  • 6.89e3
70.81
  • 70.81
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
6.90e3
  • 6.90e3
70.77
  • 70.77
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
6.93e3
  • 6.93e3
70.64
  • 70.64
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
7.01e3
  • 7.01e3
70.28
  • 70.28
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
7.21e3
  • 7.21e3
  • 8.69e3
69.45
  • 69.45
  • 63.18
AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
7.25e3
  • 7.25e3
  • 1.24e4
  • 1.34e4
69.28
  • 69.28
  • 47.51
  • 43.31
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
7.43e3
  • 7.43e3
  • 9.94e3
68.51
  • 68.51
  • 57.88
AEIR
  • AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
7.47e3
  • 7.47e3
68.36
  • 68.36
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
7.48e3
  • 7.48e3
  • 9.44e3
68.29
  • 68.29
  • 59.97
AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
7.55e3
  • 7.55e3
68.00
  • 68.00
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
7.85e3
  • 7.85e3
66.71
  • 66.71
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
7.86e3
  • 7.86e3
66.68
  • 66.68
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
7.89e3
  • 7.89e3
  • 1.10e4
66.55
  • 66.55
  • 53.59
AEIR
  • AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
7.92e3
  • 7.92e3
66.43
  • 66.43
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
7.94e3
  • 7.94e3
66.34
  • 66.34
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
8.13e3
  • 8.13e3
65.52
  • 65.52
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
8.34e3
  • 8.34e3
64.66
  • 64.66
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
8.58e3
  • 8.58e3
  • 1.06e4
  • 1.11e4
63.63
  • 63.63
  • 55.13
  • 53.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
8.76e3
  • 8.76e3
62.88
  • 62.88
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
8.82e3
  • 8.82e3
62.63
  • 62.63
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
9.07e3
  • 9.07e3
61.58
  • 61.58
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
9.51e3
  • 9.51e3
59.68
  • 59.68
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
9.65e3
  • 9.65e3
59.09
  • 59.09
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.03e4
  • 1.03e4
56.44
  • 56.44
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.04e4
  • 1.04e4
  • 1.04e4
  • 1.15e4
55.98
  • 55.98
  • 55.91
  • 51.17
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
1.05e4
  • 1.05e4
55.41
  • 55.41
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
1.06e4
  • 1.06e4
55.06
  • 55.06
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.07e4
  • 1.07e4
  • 1.15e4
  • 1.18e4
54.60
  • 54.60
  • 51.39
  • 49.78
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
1.08e4
  • 1.08e4
54.03
  • 54.03
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
1.09e4
  • 1.09e4
53.85
  • 53.85
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
1.10e4
  • 1.10e4
53.26
  • 53.26
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
1.11e4
  • 1.11e4
52.93
  • 52.93
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
1.15e4
  • 1.15e4
51.34
  • 51.34
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
1.19e4
  • 1.19e4
49.74
  • 49.74
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species15 genesCompare expression
Theria14 species16 genesCompare expression
Mammalia15 species17 genesCompare expression
Amniota17 species19 genesCompare expression
Tetrapoda18 species20 genesCompare expression
Euteleostomi19 species21 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000025041.

Cross-references

EnsemblENSSSCG00000025041
Uniprot/SPTREMBLI3LM50, I3LM50_PIG

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