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S. scrofa Gene: - ENSSSCG00000025254 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000025254
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)47 orthologs
Paralog(s)5 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000995uterus
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0000113post-juvenile adult stage
2.96e3
  • 2.96e3
  • 9.59e3
  • 1.04e4
87.48
  • 87.48
  • 59.34
  • 55.96
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
3.22e3
  • 3.22e3
86.34
  • 86.34
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
3.94e3
  • 3.94e3
  • 1.12e4
83.28
  • 83.28
  • 52.50
AEIR
  • AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
3.99e3
  • 3.99e3
83.08
  • 83.08
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
4.09e3
  • 4.09e3
82.68
  • 82.68
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
4.10e3
  • 4.10e3
82.63
  • 82.63
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
4.71e3
  • 4.71e3
80.03
  • 80.03
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
5.03e3
  • 5.03e3
78.69
  • 78.69
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
5.27e3
  • 5.27e3
  • 6.23e3
77.68
  • 77.68
  • 73.61
AEIR
  • AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
5.47e3
  • 5.47e3
76.82
  • 76.82
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
5.52e3
  • 5.52e3
76.61
  • 76.61
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
5.72e3
  • 5.72e3
75.77
  • 75.77
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
5.89e3
  • 5.89e3
  • 8.95e3
  • 9.02e3
75.02
  • 75.02
  • 62.06
  • 61.77
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
5.92e3
  • 5.92e3
74.90
  • 74.90
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
6.00e3
  • 6.00e3
  • 7.26e3
74.57
  • 74.57
  • 69.25
AEIR
  • AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
6.05e3
  • 6.05e3
74.37
  • 74.37
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
6.09e3
  • 6.09e3
  • 1.22e4
74.17
  • 74.17
  • 48.50
AEIR
  • AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
6.11e3
  • 6.11e3
74.10
  • 74.10
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
6.12e3
  • 6.12e3
74.06
  • 74.06
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
6.33e3
  • 6.33e3
73.17
  • 73.17
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
6.33e3
  • 6.33e3
73.16
  • 73.16
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
6.60e3
  • 6.60e3
72.04
  • 72.04
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
6.83e3
  • 6.83e3
71.03
  • 71.03
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
7.42e3
  • 7.42e3
68.54
  • 68.54
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
7.66e3
  • 7.66e3
67.55
  • 67.55
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
7.85e3
  • 7.85e3
66.74
  • 66.74
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
8.13e3
  • 8.13e3
  • 1.12e4
65.52
  • 65.52
  • 52.63
AEIR
  • AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
8.18e3
  • 8.18e3
65.31
  • 65.31
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
8.23e3
  • 8.23e3
65.12
  • 65.12
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
8.38e3
  • 8.38e3
  • 1.05e4
  • 1.09e4
64.50
  • 64.50
  • 55.53
  • 53.62
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018685nursing stage
  • UBERON:0000068embryo stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
8.96e3
  • 8.96e3
  • 1.20e4
  • 1.24e4
  • 1.25e4
  • 1.30e4
62.04
  • 62.04
  • 49.33
  • 47.38
  • 47.05
  • 44.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
8.98e3
  • 8.98e3
61.94
  • 61.94
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
9.07e3
  • 9.07e3
  • 1.03e4
  • 1.24e4
61.56
  • 61.56
  • 56.52
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
9.98e3
  • 9.98e3
57.72
  • 57.72
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.03e4
  • 1.03e4
  • 1.20e4
  • 1.29e4
56.41
  • 56.41
  • 48.97
  • 45.19
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.05e4
  • 1.05e4
55.58
  • 55.58
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.06e4
  • 1.06e4
  • 1.10e4
  • 1.15e4
55.04
  • 55.04
  • 53.45
  • 51.11
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
1.09e4
  • 1.09e4
53.72
  • 53.72
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.11e4
  • 1.11e4
52.93
  • 52.93
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
1.13e4
  • 1.13e4
  • 1.21e4
  • 1.32e4
  • 1.35e4
52.10
  • 52.10
  • 48.71
  • 44.17
  • 42.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
1.17e4
  • 1.17e4
  • 1.18e4
50.61
  • 50.61
  • 50.12
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.17e4
  • 1.17e4
50.49
  • 50.49
AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
1.18e4
  • 1.18e4
50.11
  • 50.11
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.20e4
  • 1.20e4
49.18
  • 49.18
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.22e4
  • 1.22e4
48.18
  • 48.18
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.27e4
  • 1.27e4
46.10
  • 46.10
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.32e4
  • 1.32e4
43.95
  • 43.95
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria3 species3 genesCompare expression
Boreoeutheria9 species9 genesCompare expression
Tetrapoda10 species47 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000025254.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Tetrapoda5 genesCompare expression

Paralogy information comes from OMA : ENSSSCG00000025254.

Cross-references

EnsemblENSSSCG00000025254
EMBLFP102653
Uniprot/SPTREMBLI3LPD3, I3LPD3_PIG

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