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S. scrofa Gene: TAP1 - ENSSSCG00000025618 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000025618
NameTAP1
Description-
OrganismSus scrofa (pig)
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
3.87e3
  • 3.87e3
  • 5.51e3
  • 1.10e4
83.62
  • 83.62
  • 76.67
  • 53.20
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018685nursing stage
4.97e3
  • 4.97e3
  • 1.33e4
78.92
  • 78.92
  • 43.64
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
6.84e3
  • 6.84e3
  • 8.57e3
  • 1.25e4
71.03
  • 71.03
  • 63.66
  • 46.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
6.89e3
  • 6.89e3
  • 1.10e4
70.78
  • 70.78
  • 53.31
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
8.28e3
  • 8.28e3
  • 1.19e4
  • 1.30e4
64.90
  • 64.90
  • 49.44
  • 45.02
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
9.51e3
  • 9.51e3
59.69
  • 59.69
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
9.71e3
  • 9.71e3
  • 1.06e4
  • 1.91e4
58.86
  • 58.86
  • 55.11
  • 18.84
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
9.86e3
  • 9.86e3
  • 1.24e4
  • 1.25e4
  • 1.25e4
  • 1.30e4
58.22
  • 58.22
  • 47.50
  • 47.20
  • 46.96
  • 44.82
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
1.01e4
  • 1.01e4
57.05
  • 57.05
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.05e4
  • 1.05e4
55.61
  • 55.61
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.08e4
  • 1.08e4
54.29
  • 54.29
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0034919juvenile stage
1.09e4
  • 1.09e4
  • 1.23e4
  • 1.34e4
  • 1.80e4
53.74
  • 53.74
  • 48.01
  • 43.30
  • 23.76
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.22e4
  • 1.22e4
48.14
  • 48.14
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
1.23e4
  • 1.23e4
  • 1.25e4
47.91
  • 47.91
  • 46.82
AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.24e4
  • 1.24e4
47.65
  • 47.65
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
  • 1.50e4
47.51
  • 47.51
  • 36.31
AEIR
  • AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
1.26e4
  • 1.26e4
46.56
  • 46.56
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.28e4
  • 1.28e4
45.77
  • 45.77
AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
1.28e4
  • 1.28e4
45.59
  • 45.59
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.45e4
  • 1.45e4
38.69
  • 38.69
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.50e4
  • 1.50e4
36.45
  • 36.45
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.51e4
  • 1.51e4
35.94
  • 35.94
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
1.66e4
  • 1.66e4
29.69
  • 29.69
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.67e4
  • 1.67e4
29.13
  • 29.13
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
1.69e4
  • 1.69e4
28.46
  • 28.46
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.69e4
  • 1.69e4
28.40
  • 28.40
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.88e4
  • 1.88e4
20.21
  • 20.21
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Amniota16 species17 genesCompare expression
Euteleostomi17 species18 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000025618.

Cross-references

EnsemblENSSSCG00000025618 (TAP1)
EMBLBX323833, CU633196
Uniprot/SPTREMBLA5D9J3, A5D9J3_PIG

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