S. scrofa Gene: - ENSSSCG00000026211 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000026211
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)16 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0016540occipital cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
514
  • 514
  • 5.64e3
97.82
  • 97.82
  • 76.10
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
714
  • 714
  • 4.66e3
96.98
  • 96.98
  • 80.24
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0034919juvenile stage
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
873
  • 873
  • 5.67e3
  • 7.68e3
  • 7.91e3
96.31
  • 96.31
  • 75.95
  • 67.44
  • 66.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
912
  • 912
96.14
  • 96.14
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.01e3
  • 1.01e3
95.74
  • 95.74
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.13e3
  • 1.13e3
95.21
  • 95.21
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0034919juvenile stage
1.54e3
  • 1.54e3
93.46
  • 93.46
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
1.79e3
  • 1.79e3
92.42
  • 92.42
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.94e3
  • 1.94e3
91.78
  • 91.78
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
3.27e3
  • 3.27e3
86.13
  • 86.13
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
4.27e3
  • 4.27e3
  • 8.05e3
  • 1.64e4
81.91
  • 81.91
  • 65.89
  • 30.52
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
7.35e3
  • 7.35e3
68.85
  • 68.85
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
7.39e3
  • 7.39e3
68.66
  • 68.66
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
1.16e4
  • 1.16e4
50.80
  • 50.80
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
1.21e4
  • 1.21e4
  • 1.36e4
  • 1.66e4
  • 1.89e4
  • 1.95e4
48.85
  • 48.85
  • 42.21
  • 29.81
  • 20.05
  • 17.21
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
1.23e4
  • 1.23e4
  • 2.16e4
47.69
  • 47.69
  • 8.54
AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
  • 1.51e4
47.51
  • 47.51
  • 36.08
AEIR
  • AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
1.29e4
  • 1.29e4
45.14
  • 45.14
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
1.57e4
  • 1.57e4
33.29
  • 33.29
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.61e4
  • 1.61e4
31.63
  • 31.63
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.65e4
  • 1.65e4
30.20
  • 30.20
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
1.68e4
  • 1.68e4
28.98
  • 28.98
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.68e4
  • 1.68e4
28.79
  • 28.79
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.72e4
  • 1.72e4
27.26
  • 27.26
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
1.81e4
  • 1.81e4
23.35
  • 23.35
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Amniota14 species14 genesCompare expression
Euteleostomi15 species16 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000026211.

Cross-references

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