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S. scrofa Gene: TLR1 - ENSSSCG00000026583 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000026583
NameTLR1
Descriptiontoll-like receptor 1 [Source:HGNC Symbol;Acc:HGNC:11847]
OrganismSus scrofa (pig)
Synonym(s)cd281, kiaa0012, rsc786, tlr6
Orthologs(s)18 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
2.75e3
  • 2.75e3
88.34
  • 88.34
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
3.23e3
  • 3.23e3
86.30
  • 86.30
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
3.52e3
  • 3.52e3
85.07
  • 85.07
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
3.57e3
  • 3.57e3
  • 3.60e3
  • 4.48e3
84.88
  • 84.88
  • 84.76
  • 81.02
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0034919juvenile stage
5.52e3
  • 5.52e3
76.61
  • 76.61
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
6.27e3
  • 6.27e3
73.41
  • 73.41
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
6.53e3
  • 6.53e3
72.33
  • 72.33
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
7.21e3
  • 7.21e3
69.42
  • 69.42
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
7.52e3
  • 7.52e3
68.12
  • 68.12
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
8.10e3
  • 8.10e3
  • 9.95e3
  • 1.26e4
65.65
  • 65.65
  • 57.82
  • 46.57
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0034919juvenile stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018685nursing stage
8.34e3
  • 8.34e3
  • 1.11e4
  • 1.32e4
64.64
  • 64.64
  • 52.75
  • 44.05
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
8.38e3
  • 8.38e3
64.49
  • 64.49
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
9.04e3
  • 9.04e3
61.69
  • 61.69
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
9.05e3
  • 9.05e3
61.64
  • 61.64
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
9.16e3
  • 9.16e3
61.19
  • 61.19
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
9.16e3
  • 9.16e3
61.18
  • 61.18
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
9.56e3
  • 9.56e3
  • 1.06e4
59.48
  • 59.48
  • 55.26
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
9.75e3
  • 9.75e3
  • 1.07e4
58.68
  • 58.68
  • 54.71
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
9.81e3
  • 9.81e3
  • 1.19e4
  • 1.33e4
58.43
  • 58.43
  • 49.69
  • 43.50
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.01e4
  • 1.01e4
57.36
  • 57.36
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
1.02e4
  • 1.02e4
56.93
  • 56.93
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.08e4
  • 1.08e4
54.11
  • 54.11
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.10e4
  • 1.10e4
  • 1.21e4
  • 1.29e4
53.29
  • 53.29
  • 48.57
  • 45.36
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
1.11e4
  • 1.11e4
53.09
  • 53.09
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
1.13e4
  • 1.13e4
52.05
  • 52.05
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
1.13e4
  • 1.13e4
  • 1.22e4
  • 1.24e4
51.99
  • 51.99
  • 48.16
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
1.14e4
  • 1.14e4
51.70
  • 51.70
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
1.15e4
  • 1.15e4
  • 1.20e4
  • 1.25e4
  • 1.30e4
  • 1.46e4
51.30
  • 51.30
  • 49.19
  • 47.02
  • 45.08
  • 37.91
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
1.16e4
  • 1.16e4
51.02
  • 51.02
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.16e4
  • 1.16e4
50.68
  • 50.68
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
1.16e4
  • 1.16e4
50.67
  • 50.67
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
1.17e4
  • 1.17e4
50.60
  • 50.60
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
1.18e4
  • 1.18e4
49.92
  • 49.92
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.19e4
  • 1.19e4
49.61
  • 49.61
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.20e4
  • 1.20e4
  • 1.28e4
49.22
  • 49.22
  • 45.79
AEIR
  • AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
1.22e4
  • 1.22e4
48.09
  • 48.09
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.23e4
  • 1.23e4
47.76
  • 47.76
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.26e4
  • 1.26e4
46.78
  • 46.78
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
1.29e4
  • 1.29e4
45.52
  • 45.52
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
1.29e4
  • 1.29e4
  • 1.32e4
  • 1.44e4
  • 1.52e4
45.42
  • 45.42
  • 43.87
  • 38.98
  • 35.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.30e4
  • 1.30e4
45.06
  • 45.06
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
1.30e4
  • 1.30e4
44.74
  • 44.74
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
1.30e4
  • 1.30e4
44.69
  • 44.69
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.31e4
  • 1.31e4
44.37
  • 44.37
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.35e4
  • 1.35e4
42.91
  • 42.91
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.41e4
  • 1.41e4
40.44
  • 40.44
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
1.56e4
  • 1.56e4
34.02
  • 34.02
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.57e4
  • 1.57e4
33.58
  • 33.58
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.59e4
  • 1.59e4
32.47
  • 32.47
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Mammalia12 species12 genesCompare expression
Amniota14 species15 genesCompare expression
Tetrapoda15 species17 genesCompare expression
Euteleostomi16 species18 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000026583.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Mammalia1 geneCompare expression
Euteleostomi2 genesCompare expression

Paralogy information comes from OMA : ENSSSCG00000026583.

Cross-references

EnsemblENSSSCG00000026583 (TLR1)
HGNCHGNC:11847 (TLR1)
EMBLAB208695, AB210286, CU694791
Uniprot/SPTREMBLQ59HI9, Q59HI9_PIG

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