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S. scrofa Gene: - ENSSSCG00000026587 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000026587
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)15 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
3.69e3
  • 3.69e3
  • 1.62e4
  • 2.06e4
84.38
  • 84.38
  • 31.23
  • 12.74
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
5.13e3
  • 5.13e3
  • 1.44e4
  • 1.68e4
78.27
  • 78.27
  • 39.02
  • 28.93
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0034919juvenile stage
1.00e4
  • 1.00e4
57.47
  • 57.47
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
1.03e4
  • 1.03e4
  • 1.96e4
56.26
  • 56.26
  • 16.90
AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.17e4
  • 1.17e4
50.60
  • 50.60
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.19e4
  • 1.19e4
  • 1.93e4
49.64
  • 49.64
  • 18.07
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0034919juvenile stage
1.22e4
  • 1.22e4
48.41
  • 48.41
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
1.49e4
  • 1.49e4
36.63
  • 36.63
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.60e4
  • 1.60e4
32.00
  • 32.00
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
1.60e4
  • 1.60e4
  • 2.03e4
  • 2.16e4
31.97
  • 31.97
  • 14.09
  • 8.32
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
1.66e4
  • 1.66e4
29.77
  • 29.77
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.71e4
  • 1.71e4
  • 1.79e4
27.43
  • 27.43
  • 23.99
AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.79e4
  • 1.79e4
23.97
  • 23.97
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.82e4
  • 1.82e4
  • 1.85e4
22.92
  • 22.92
  • 21.48
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
1.85e4
  • 1.85e4
  • 1.96e4
  • 2.07e4
  • 2.19e4
21.45
  • 21.45
  • 16.80
  • 12.32
  • 7.28
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.99e4
  • 1.99e4
15.64
  • 15.64
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
2.07e4
  • 2.07e4
12.31
  • 12.31
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
2.11e4
  • 2.11e4
10.59
  • 10.59
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Theria12 species12 genesCompare expression
Mammalia13 species13 genesCompare expression
Amniota14 species14 genesCompare expression
Euteleostomi15 species15 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000026587.

Cross-references

EnsemblENSSSCG00000026587
Uniprot/SPTREMBLI3L6M6, I3L6M6_PIG

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