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S. scrofa Gene: XCR1 - ENSSSCG00000026707 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000026707
NameXCR1
Descriptionchemokine (C motif) receptor 1 [Source:HGNC Symbol;Acc:HGNC:1625]
OrganismSus scrofa (pig)
Synonym(s)ccxcr1, gpr5
Orthologs(s)20 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002106spleen
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
6.85e3
  • 6.85e3
  • 7.96e3
  • 9.06e3
70.95
  • 70.95
  • 66.27
  • 61.60
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.08e4
  • 1.08e4
54.38
  • 54.38
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
1.17e4
  • 1.17e4
50.54
  • 50.54
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
  • 1.72e4
47.51
  • 47.51
  • 27.21
AEIR
  • AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.24e4
  • 1.24e4
47.39
  • 47.39
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
1.25e4
  • 1.25e4
  • 1.26e4
  • 1.36e4
46.86
  • 46.86
  • 46.47
  • 42.39
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.27e4
  • 1.27e4
  • 1.41e4
46.05
  • 46.05
  • 40.42
AEIR
  • AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
  • UBERON:0018241prime adult stage
1.31e4
  • 1.31e4
  • 1.42e4
  • 1.54e4
  • 1.56e4
  • 1.73e4
44.37
  • 44.37
  • 39.65
  • 34.62
  • 33.87
  • 26.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
1.35e4
  • 1.35e4
  • 1.53e4
42.90
  • 42.90
  • 35.28
AEIR
  • AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
1.36e4
  • 1.36e4
42.20
  • 42.20
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.43e4
  • 1.43e4
39.33
  • 39.33
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.49e4
  • 1.49e4
  • 1.50e4
  • 1.75e4
36.97
  • 36.97
  • 36.47
  • 25.80
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
1.49e4
  • 1.49e4
36.65
  • 36.65
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.54e4
  • 1.54e4
34.81
  • 34.81
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
1.57e4
  • 1.57e4
33.52
  • 33.52
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.62e4
  • 1.62e4
31.16
  • 31.16
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
1.67e4
  • 1.67e4
29.27
  • 29.27
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.72e4
  • 1.72e4
27.21
  • 27.21
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.78e4
  • 1.78e4
24.41
  • 24.41
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
1.89e4
  • 1.89e4
20.07
  • 20.07
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species20 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000026707.

Cross-references

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