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S. scrofa Gene: - ENSSSCG00000026729 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000026729
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)16 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
2.68e3
  • 2.68e3
88.62
  • 88.62
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
2.84e3
  • 2.84e3
  • 5.72e3
  • 1.24e4
87.95
  • 87.95
  • 75.75
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
2.91e3
  • 2.91e3
87.66
  • 87.66
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
3.29e3
  • 3.29e3
  • 4.63e3
86.06
  • 86.06
  • 80.37
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
4.01e3
  • 4.01e3
  • 1.03e4
83.03
  • 83.03
  • 56.21
AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
4.42e3
  • 4.42e3
81.28
  • 81.28
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
4.71e3
  • 4.71e3
  • 7.45e3
  • 8.81e3
80.06
  • 80.06
  • 68.43
  • 62.67
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
4.86e3
  • 4.86e3
  • 5.64e3
  • 1.10e4
79.39
  • 79.39
  • 76.10
  • 53.38
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
4.96e3
  • 4.96e3
  • 6.89e3
78.99
  • 78.99
  • 70.80
AEIR
  • AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
4.96e3
  • 4.96e3
78.98
  • 78.98
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
5.17e3
  • 5.17e3
78.08
  • 78.08
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0034919juvenile stage
5.22e3
  • 5.22e3
  • 5.52e3
  • 5.53e3
  • 5.82e3
77.90
  • 77.90
  • 76.60
  • 76.54
  • 75.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
5.84e3
  • 5.84e3
75.23
  • 75.23
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
6.04e3
  • 6.04e3
74.39
  • 74.39
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
6.08e3
  • 6.08e3
74.25
  • 74.25
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
6.31e3
  • 6.31e3
73.27
  • 73.27
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
6.53e3
  • 6.53e3
  • 6.72e3
  • 6.79e3
72.33
  • 72.33
  • 71.51
  • 71.22
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
6.62e3
  • 6.62e3
71.93
  • 71.93
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0000068embryo stage
6.64e3
  • 6.64e3
  • 8.47e3
  • 9.02e3
  • 9.11e3
  • 1.13e4
71.84
  • 71.84
  • 64.11
  • 61.77
  • 61.40
  • 52.28
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
6.79e3
  • 6.79e3
71.20
  • 71.20
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
7.17e3
  • 7.17e3
  • 8.72e3
  • 1.09e4
69.62
  • 69.62
  • 63.04
  • 53.70
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
7.59e3
  • 7.59e3
67.81
  • 67.81
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
7.67e3
  • 7.67e3
67.51
  • 67.51
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
7.73e3
  • 7.73e3
67.25
  • 67.25
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
8.50e3
  • 8.50e3
63.96
  • 63.96
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
8.51e3
  • 8.51e3
63.92
  • 63.92
AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
8.61e3
  • 8.61e3
63.50
  • 63.50
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
8.80e3
  • 8.80e3
62.70
  • 62.70
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0034919juvenile stage
9.34e3
  • 9.34e3
60.39
  • 60.39
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
9.40e3
  • 9.40e3
60.14
  • 60.14
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
9.58e3
  • 9.58e3
59.41
  • 59.41
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
9.64e3
  • 9.64e3
59.12
  • 59.12
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
9.68e3
  • 9.68e3
58.96
  • 58.96
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
9.77e3
  • 9.77e3
58.57
  • 58.57
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
9.81e3
  • 9.81e3
58.41
  • 58.41
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
9.83e3
  • 9.83e3
  • 1.15e4
  • 1.16e4
58.34
  • 58.34
  • 51.36
  • 50.67
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
9.92e3
  • 9.92e3
57.97
  • 57.97
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
1.03e4
  • 1.03e4
56.29
  • 56.29
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
1.05e4
  • 1.05e4
55.31
  • 55.31
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
1.07e4
  • 1.07e4
54.72
  • 54.72
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
1.13e4
  • 1.13e4
52.26
  • 52.26
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.18e4
  • 1.18e4
  • 1.24e4
50.13
  • 50.13
  • 47.55
AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.22e4
  • 1.22e4
48.41
  • 48.41
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
1.25e4
  • 1.25e4
47.11
  • 47.11
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.25e4
  • 1.25e4
47.10
  • 47.10
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.32e4
  • 1.32e4
44.24
  • 44.24
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.49e4
  • 1.49e4
36.68
  • 36.68
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Theria12 species12 genesCompare expression
Mammalia13 species13 genesCompare expression
Amniota14 species14 genesCompare expression
Tetrapoda15 species15 genesCompare expression
Euteleostomi16 species16 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000026729.

Cross-references

EnsemblENSSSCG00000026729
EMBLFP325176
Uniprot/SPTREMBLI3L597, I3L597_PIG

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