S. scrofa Gene: RS1 - ENSSSCG00000026932 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000026932
NameRS1
Descriptionretinoschisin 1 [Source:HGNC Symbol;Acc:HGNC:10457]
OrganismSus scrofa (pig)
Synonym(s)rs, xlrs1
Orthologs(s)19 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001013adipose tissue
  • UBERON:0018685nursing stage
1.24e4
  • 1.24e4
47.51
  • 47.51
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
1.25e4
  • 1.25e4
  • 1.40e4
47.11
  • 47.11
  • 40.85
AEIR
  • AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
1.33e4
  • 1.33e4
43.79
  • 43.79
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
1.40e4
  • 1.40e4
  • 1.84e4
40.65
  • 40.65
  • 22.04
AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.49e4
  • 1.49e4
37.00
  • 37.00
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.52e4
  • 1.52e4
35.60
  • 35.60
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
1.59e4
  • 1.59e4
  • 1.61e4
32.45
  • 32.45
  • 31.87
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.65e4
  • 1.65e4
  • 1.91e4
29.94
  • 29.94
  • 18.90
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
1.67e4
  • 1.67e4
  • 1.93e4
29.34
  • 29.34
  • 18.11
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.70e4
  • 1.70e4
27.77
  • 27.77
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
1.71e4
  • 1.71e4
27.53
  • 27.53
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.72e4
  • 1.72e4
  • 1.74e4
  • 1.84e4
  • 1.92e4
26.99
  • 26.99
  • 26.27
  • 22.20
  • 18.68
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.75e4
  • 1.75e4
25.66
  • 25.66
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.79e4
  • 1.79e4
24.02
  • 24.02
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.82e4
  • 1.82e4
22.70
  • 22.70
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.82e4
  • 1.82e4
22.64
  • 22.64
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.84e4
  • 1.84e4
22.19
  • 22.19
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
1.86e4
  • 1.86e4
20.99
  • 20.99
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
1.90e4
  • 1.90e4
19.67
  • 19.67
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.92e4
  • 1.92e4
  • 2.06e4
18.53
  • 18.53
  • 12.74
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.95e4
  • 1.95e4
17.22
  • 17.22
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000026932.

Cross-references

EnsemblENSSSCG00000026932 (RS1)
HGNCHGNC:10457 (RS1)
EMBLFP565742
Uniprot/SPTREMBLI3LDV9, I3LDV9_PIG, K7GRW9, K7GRW9_PIG

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