S. scrofa Gene: - ENSSSCG00000027454 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000027454
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)14 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002113kidney
  • UBERON:0000104life cycle
706
  • 706
97.01
  • 97.01
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
725
  • 725
  • 8.17e3
96.93
  • 96.93
  • 65.38
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
879
  • 879
  • 899
  • 3.89e3
96.28
  • 96.28
  • 96.19
  • 83.50
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
1.03e3
  • 1.03e3
95.63
  • 95.63
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.29e3
  • 1.29e3
94.53
  • 94.53
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
3.59e3
  • 3.59e3
84.77
  • 84.77
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
3.77e3
  • 3.77e3
84.04
  • 84.04
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018685nursing stage
  • UBERON:0000113post-juvenile adult stage
7.59e3
  • 7.59e3
  • 1.58e4
67.82
  • 67.82
  • 32.95
AEIR
  • AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
8.34e3
  • 8.34e3
64.64
  • 64.64
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
9.15e3
  • 9.15e3
61.20
  • 61.20
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.06e4
  • 1.06e4
  • 1.37e4
  • 1.38e4
  • 1.78e4
54.96
  • 54.96
  • 42.02
  • 41.49
  • 24.73
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
1.13e4
  • 1.13e4
52.03
  • 52.03
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
1.23e4
  • 1.23e4
  • 1.49e4
47.80
  • 47.80
  • 36.77
AEIR
  • AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
1.37e4
  • 1.37e4
  • 1.91e4
  • 1.96e4
41.75
  • 41.75
  • 18.86
  • 16.71
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.47e4
  • 1.47e4
37.90
  • 37.90
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
1.82e4
  • 1.82e4
  • 1.88e4
  • 2.16e4
22.91
  • 22.91
  • 20.19
  • 8.32
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.82e4
  • 1.82e4
22.72
  • 22.72
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.85e4
  • 1.85e4
21.45
  • 21.45
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.89e4
  • 1.89e4
20.03
  • 20.03
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.91e4
  • 1.91e4
  • 2.18e4
19.10
  • 19.10
  • 7.71
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
1.98e4
  • 1.98e4
15.88
  • 15.88
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
2.05e4
  • 2.05e4
13.00
  • 13.00
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Theria12 species12 genesCompare expression
Amniota13 species13 genesCompare expression
Tetrapoda14 species14 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000027454.

Cross-references

EnsemblENSSSCG00000027454
EMBLFP565705
Uniprot/SPTREMBLI3LK75, I3LK75_PIG

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