S. scrofa Gene: LSAMP - ENSSSCG00000027941 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000027941
NameLSAMP
Descriptionlimbic system-associated membrane protein [Source:HGNC Symbol;Acc:HGNC:6705]
OrganismSus scrofa (pig)
Synonym(s)iglon3, lamp
Orthologs(s)22 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
915
  • 915
96.12
  • 96.12
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0034919juvenile stage
1.11e3
  • 1.11e3
95.31
  • 95.31
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
1.11e3
  • 1.11e3
95.30
  • 95.30
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.19e3
  • 1.19e3
94.98
  • 94.98
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.47e3
  • 1.47e3
93.79
  • 93.79
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.55e3
  • 1.55e3
  • 2.78e3
93.45
  • 93.45
  • 88.22
AEIR
  • AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.55e3
  • 1.55e3
93.45
  • 93.45
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
1.63e3
  • 1.63e3
  • 1.68e3
  • 2.02e3
  • 2.12e3
93.10
  • 93.10
  • 92.89
  • 91.44
  • 91.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.74e3
  • 1.74e3
92.61
  • 92.61
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.75e3
  • 1.75e3
92.58
  • 92.58
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
1.87e3
  • 1.87e3
92.06
  • 92.06
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
2.01e3
  • 2.01e3
91.49
  • 91.49
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
2.23e3
  • 2.23e3
  • 2.85e3
90.53
  • 90.53
  • 87.91
AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
3.69e3
  • 3.69e3
84.36
  • 84.36
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
3.93e3
  • 3.93e3
83.34
  • 83.34
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
4.61e3
  • 4.61e3
80.48
  • 80.48
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0000113post-juvenile adult stage
6.24e3
  • 6.24e3
  • 1.14e4
  • 1.19e4
73.56
  • 73.56
  • 51.85
  • 49.44
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
6.77e3
  • 6.77e3
71.29
  • 71.29
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
8.55e3
  • 8.55e3
  • 1.50e4
  • 1.58e4
63.76
  • 63.76
  • 36.30
  • 33.23
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
8.98e3
  • 8.98e3
  • 1.10e4
  • 1.24e4
61.93
  • 61.93
  • 53.51
  • 47.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
9.80e3
  • 9.80e3
  • 1.08e4
58.46
  • 58.46
  • 54.08
AEIR
  • AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
1.10e4
  • 1.10e4
53.52
  • 53.52
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
1.11e4
  • 1.11e4
52.75
  • 52.75
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0034919juvenile stage
1.12e4
  • 1.12e4
52.38
  • 52.38
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.16e4
  • 1.16e4
  • 1.27e4
50.96
  • 50.96
  • 46.27
AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
1.18e4
  • 1.18e4
  • 1.27e4
49.98
  • 49.98
  • 46.07
AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
  • 1.24e4
47.51
  • 47.51
  • 47.41
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
1.28e4
  • 1.28e4
  • 1.45e4
  • 1.50e4
45.80
  • 45.80
  • 38.42
  • 36.34
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
1.29e4
  • 1.29e4
45.31
  • 45.31
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
1.30e4
  • 1.30e4
44.81
  • 44.81
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
1.32e4
  • 1.32e4
43.98
  • 43.98
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.38e4
  • 1.38e4
41.63
  • 41.63
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
1.39e4
  • 1.39e4
41.29
  • 41.29
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.41e4
  • 1.41e4
40.32
  • 40.32
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018685nursing stage
  • UBERON:0000068embryo stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
1.42e4
  • 1.42e4
  • 1.48e4
  • 1.50e4
  • 1.54e4
  • 1.68e4
39.95
  • 39.95
  • 37.14
  • 36.57
  • 34.83
  • 28.83
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.52e4
  • 1.52e4
35.63
  • 35.63
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.53e4
  • 1.53e4
35.25
  • 35.25
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.53e4
  • 1.53e4
  • 1.71e4
35.09
  • 35.09
  • 27.46
AEIR
  • AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.62e4
  • 1.62e4
31.53
  • 31.53
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.69e4
  • 1.69e4
28.58
  • 28.58
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Amniota14 species14 genesCompare expression
Tetrapoda15 species15 genesCompare expression
Euteleostomi16 species16 genesCompare expression
Bilateria22 species22 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000027941.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata3 genesCompare expression

Paralogy information comes from OMA : ENSSSCG00000027941.

Cross-references

EnsemblENSSSCG00000027941 (LSAMP)
HGNCHGNC:6705 (LSAMP)
EMBLAEMK01195214, CU915660, FP331357
Uniprot/SPTREMBLI3LEZ3, I3LEZ3_PIG

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