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S. scrofa Gene: - ENSSSCG00000028031 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000028031
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)23 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
337
  • 337
  • 1.66e3
98.58
  • 98.58
  • 92.98
AEIR
  • AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
3.38e3
  • 3.38e3
  • 6.18e3
85.68
  • 85.68
  • 73.81
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
3.57e3
  • 3.57e3
  • 3.98e3
  • 4.80e3
  • 6.06e3
84.85
  • 84.85
  • 83.12
  • 79.66
  • 74.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
3.74e3
  • 3.74e3
84.13
  • 84.13
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
4.40e3
  • 4.40e3
81.36
  • 81.36
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0034919juvenile stage
4.58e3
  • 4.58e3
80.60
  • 80.60
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
4.88e3
  • 4.88e3
79.30
  • 79.30
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
4.89e3
  • 4.89e3
79.28
  • 79.28
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
5.08e3
  • 5.08e3
78.49
  • 78.49
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
5.34e3
  • 5.34e3
77.38
  • 77.38
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
5.42e3
  • 5.42e3
77.02
  • 77.02
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
5.43e3
  • 5.43e3
76.97
  • 76.97
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
5.58e3
  • 5.58e3
  • 9.60e3
76.34
  • 76.34
  • 59.30
AEIR
  • AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
5.61e3
  • 5.61e3
76.21
  • 76.21
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
5.72e3
  • 5.72e3
75.75
  • 75.75
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
6.17e3
  • 6.17e3
  • 6.40e3
  • 1.09e4
73.84
  • 73.84
  • 72.86
  • 53.95
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
6.92e3
  • 6.92e3
70.65
  • 70.65
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018241prime adult stage
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
7.00e3
  • 7.00e3
  • 8.54e3
  • 8.60e3
  • 8.65e3
  • 9.67e3
70.31
  • 70.31
  • 63.81
  • 63.54
  • 63.34
  • 59.02
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
7.07e3
  • 7.07e3
  • 9.07e3
70.03
  • 70.03
  • 61.54
AEIR
  • AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
7.62e3
  • 7.62e3
67.70
  • 67.70
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
7.99e3
  • 7.99e3
66.14
  • 66.14
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
8.88e3
  • 8.88e3
62.38
  • 62.38
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
8.89e3
  • 8.89e3
62.33
  • 62.33
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
9.06e3
  • 9.06e3
  • 1.11e4
  • 1.14e4
61.59
  • 61.59
  • 53.01
  • 51.78
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
9.09e3
  • 9.09e3
  • 1.29e4
61.49
  • 61.49
  • 45.32
AEIR
  • AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
9.10e3
  • 9.10e3
61.42
  • 61.42
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
9.42e3
  • 9.42e3
  • 1.07e4
60.09
  • 60.09
  • 54.68
AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
9.51e3
  • 9.51e3
  • 1.04e4
  • 1.24e4
59.70
  • 59.70
  • 56.01
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
9.76e3
  • 9.76e3
58.65
  • 58.65
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
9.85e3
  • 9.85e3
58.23
  • 58.23
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
1.03e4
  • 1.03e4
56.26
  • 56.26
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
1.05e4
  • 1.05e4
55.53
  • 55.53
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.05e4
  • 1.05e4
55.36
  • 55.36
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
1.12e4
  • 1.12e4
52.47
  • 52.47
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
1.15e4
  • 1.15e4
51.07
  • 51.07
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.16e4
  • 1.16e4
50.84
  • 50.84
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.23e4
  • 1.23e4
  • 1.26e4
  • 1.38e4
47.71
  • 47.71
  • 46.66
  • 41.55
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
1.24e4
  • 1.24e4
47.36
  • 47.36
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
1.25e4
  • 1.25e4
46.94
  • 46.94
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.26e4
  • 1.26e4
  • 1.30e4
  • 1.38e4
46.60
  • 46.60
  • 45.11
  • 41.34
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
1.30e4
  • 1.30e4
44.74
  • 44.74
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.32e4
  • 1.32e4
43.85
  • 43.85
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
1.43e4
  • 1.43e4
39.58
  • 39.58
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.46e4
  • 1.46e4
  • 1.47e4
38.16
  • 38.16
  • 37.81
AEIR
  • AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.50e4
  • 1.50e4
36.21
  • 36.21
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Euteleostomi16 species16 genesCompare expression
Bilateria23 species23 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000028031.

Cross-references

EnsemblENSSSCG00000028031
EMBLFP700091
Uniprot/SPTREMBLI3LTU6, I3LTU6_PIG

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