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S. scrofa Gene: HOXC11 - ENSSSCG00000028104 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000028104
NameHOXC11
Descriptionhomeobox C11 [Source:HGNC Symbol;Acc:HGNC:5123]
OrganismSus scrofa (pig)
Synonym(s)hox3h
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
8.31e3
  • 8.31e3
64.76
  • 64.76
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
1.15e4
  • 1.15e4
51.30
  • 51.30
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018685nursing stage
1.30e4
  • 1.30e4
44.93
  • 44.93
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.35e4
  • 1.35e4
42.72
  • 42.72
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.46e4
  • 1.46e4
38.25
  • 38.25
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
1.51e4
  • 1.51e4
  • 1.74e4
35.94
  • 35.94
  • 26.05
AEIR
  • AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.53e4
  • 1.53e4
35.12
  • 35.12
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
1.59e4
  • 1.59e4
32.45
  • 32.45
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.88e4
  • 1.88e4
20.21
  • 20.21
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
1.90e4
  • 1.90e4
19.41
  • 19.41
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
2.07e4
  • 2.07e4
  • 2.16e4
12.14
  • 12.14
  • 8.32
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Mammalia12 species12 genesCompare expression
Amniota14 species14 genesCompare expression
Tetrapoda15 species15 genesCompare expression
Euteleostomi16 species17 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000028104.

Cross-references

EnsemblENSSSCG00000028104 (HOXC11)
HGNCHGNC:5123 (HOXC11)
EMBLFP579005
Uniprot/SPTREMBLI3LNU5, I3LNU5_PIG

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