S. scrofa Gene: CALCOCO1 - ENSSSCG00000028481 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000028481
NameCALCOCO1
Descriptioncalcium binding and coiled-coil domain 1 [Source:HGNC Symbol;Acc:HGNC:29306]
OrganismSus scrofa (pig)
Synonym(s)calphoglin, cocoa, kiaa1536

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002048lung
  • UBERON:0000104life cycle
694
  • 694
96.56820
  • 96.56820
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.67e3
  • 1.67e3
  • 3.36e3
91.75245
  • 91.75245
  • 83.34613
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
2.24e3
  • 2.24e3
88.93624
  • 88.93624
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
2.29e3
  • 2.29e3
88.67953
  • 88.67953
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
2.64e3
  • 2.64e3
86.92649
  • 86.92649
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
4.43e3
  • 4.43e3
78.05715
  • 78.05715
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EMBLFP565745
EnsemblENSSSCG00000028481 (CALCOCO1)
HGNCHGNC:29306 (CALCOCO1)
Uniprot/SPTREMBLI3LSQ0, I3LSQ0_PIG

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