S. scrofa Gene: CALCOCO1 - ENSSSCG00000028481 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000028481
NameCALCOCO1
Descriptioncalcium binding and coiled-coil domain 1 [Source:HGNC Symbol;Acc:HGNC:29306]
OrganismSus scrofa (pig)
Synonym(s)calphoglin, cocoa, kiaa1536

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
694
  • 694
  • 2.03e3
97.01910
  • 97.01910
  • 91.28097
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.37e3
  • 1.37e3
  • 3.36e3
  • 3.97e3
94.09412
  • 94.09412
  • 85.53424
  • 82.90864
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0034919juvenile stage
1.57e3
  • 1.57e3
93.24243
  • 93.24243
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
  • UBERON:0018685nursing stage
1.86e3
  • 1.86e3
  • 2.20e3
  • 2.48e3
92.00791
  • 92.00791
  • 90.54224
  • 89.34554
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0034919juvenile stage
1.87e3
  • 1.87e3
  • 6.18e3
91.97208
  • 91.97208
  • 73.40416
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0034919juvenile stage
1.96e3
  • 1.96e3
  • 2.34e3
  • 4.65e3
91.57420
  • 91.57420
  • 89.92593
  • 80.02220
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
2.22e3
  • 2.22e3
  • 2.29e3
90.46714
  • 90.46714
  • 90.16690
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
2.24e3
  • 2.24e3
90.38928
  • 90.38928
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
2.64e3
  • 2.64e3
88.64418
  • 88.64418
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
2.91e3
  • 2.91e3
  • 4.43e3
87.49570
  • 87.49570
  • 80.93999
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
3.29e3
  • 3.29e3
85.83960
  • 85.83960
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
3.48e3
  • 3.48e3
85.04611
  • 85.04611
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
3.89e3
  • 3.89e3
83.27628
  • 83.27628
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
3.92e3
  • 3.92e3
  • 5.49e3
83.16036
  • 83.16036
  • 76.39367
AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
4.00e3
  • 4.00e3
82.78226
  • 82.78226
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
4.42e3
  • 4.42e3
80.97922
  • 80.97922
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0034919juvenile stage
4.60e3
  • 4.60e3
80.21335
  • 80.21335
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
4.77e3
  • 4.77e3
79.48688
  • 79.48688
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
5.12e3
  • 5.12e3
77.97927
  • 77.97927
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
5.27e3
  • 5.27e3
77.35143
  • 77.35143
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
5.38e3
  • 5.38e3
76.85625
  • 76.85625
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
5.44e3
  • 5.44e3
76.58792
  • 76.58792
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
5.53e3
  • 5.53e3
76.22256
  • 76.22256
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0034919juvenile stage
5.86e3
  • 5.86e3
74.80695
  • 74.80695
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0034919juvenile stage
5.86e3
  • 5.86e3
74.78669
  • 74.78669
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
6.17e3
  • 6.17e3
73.47686
  • 73.47686
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
6.30e3
  • 6.30e3
72.92300
  • 72.92300
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0034919juvenile stage
6.41e3
  • 6.41e3
72.44890
  • 72.44890
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
6.51e3
  • 6.51e3
71.99811
  • 71.99811
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0034919juvenile stage
6.61e3
  • 6.61e3
71.57140
  • 71.57140
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
6.82e3
  • 6.82e3
70.66462
  • 70.66462
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
6.96e3
  • 6.96e3
70.07902
  • 70.07902
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
7.13e3
  • 7.13e3
69.32226
  • 69.32226
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0034919juvenile stage
8.04e3
  • 8.04e3
65.42382
  • 65.42382
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
8.06e3
  • 8.06e3
65.35315
  • 65.35315
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
8.24e3
  • 8.24e3
64.57132
  • 64.57132
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
8.59e3
  • 8.59e3
63.03794
  • 63.03794
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
8.78e3
  • 8.78e3
62.23189
  • 62.23189
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
9.24e3
  • 9.24e3
60.23856
  • 60.23856
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
9.83e3
  • 9.83e3
57.73447
  • 57.73447
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EMBLFP565745
EnsemblENSSSCG00000028481 (CALCOCO1)
HGNCHGNC:29306 (CALCOCO1)
Uniprot/SPTREMBLI3LSQ0, I3LSQ0_PIG

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