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S. scrofa Gene: SLC39A9 - ENSSSCG00000028600 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000028600
NameSLC39A9
Descriptionsolute carrier family 39 member 9 [Source:HGNC Symbol;Acc:HGNC:20182]
OrganismSus scrofa (pig)
Synonym(s)flj11274
Orthologs(s)24 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
2.96e3
  • 2.96e3
  • 3.15e3
  • 3.66e3
87.45
  • 87.45
  • 86.66
  • 84.48
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
3.07e3
  • 3.07e3
86.97
  • 86.97
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
3.40e3
  • 3.40e3
85.59
  • 85.59
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
3.55e3
  • 3.55e3
  • 5.17e3
84.96
  • 84.96
  • 78.07
AEIR
  • AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
4.09e3
  • 4.09e3
82.65
  • 82.65
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
4.10e3
  • 4.10e3
82.61
  • 82.61
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
4.18e3
  • 4.18e3
  • 5.22e3
  • 5.72e3
82.27
  • 82.27
  • 77.87
  • 75.74
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
4.19e3
  • 4.19e3
82.26
  • 82.26
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
4.30e3
  • 4.30e3
81.77
  • 81.77
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
4.31e3
  • 4.31e3
81.73
  • 81.73
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
4.43e3
  • 4.43e3
81.22
  • 81.22
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
4.77e3
  • 4.77e3
  • 4.84e3
79.79
  • 79.79
  • 79.50
AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
5.06e3
  • 5.06e3
78.57
  • 78.57
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
5.08e3
  • 5.08e3
78.48
  • 78.48
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
5.38e3
  • 5.38e3
  • 6.40e3
  • 6.72e3
  • 6.78e3
77.19
  • 77.19
  • 72.89
  • 71.51
  • 71.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
5.60e3
  • 5.60e3
  • 5.65e3
  • 8.01e3
76.26
  • 76.26
  • 76.04
  • 66.04
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
5.65e3
  • 5.65e3
  • 5.91e3
76.07
  • 76.07
  • 74.97
AEIR
  • AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
5.73e3
  • 5.73e3
75.71
  • 75.71
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0034919juvenile stage
5.77e3
  • 5.77e3
75.53
  • 75.53
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
5.85e3
  • 5.85e3
  • 6.57e3
75.20
  • 75.20
  • 72.14
AEIR
  • AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
5.88e3
  • 5.88e3
75.07
  • 75.07
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
5.89e3
  • 5.89e3
  • 6.76e3
  • 7.37e3
75.03
  • 75.03
  • 71.34
  • 68.76
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
5.91e3
  • 5.91e3
74.96
  • 74.96
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
5.91e3
  • 5.91e3
74.95
  • 74.95
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
5.93e3
  • 5.93e3
74.88
  • 74.88
AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
6.20e3
  • 6.20e3
73.73
  • 73.73
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
6.27e3
  • 6.27e3
73.43
  • 73.43
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
6.32e3
  • 6.32e3
  • 8.59e3
  • 1.24e4
73.23
  • 73.23
  • 63.59
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
6.39e3
  • 6.39e3
72.92
  • 72.92
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
6.40e3
  • 6.40e3
  • 7.70e3
  • 7.85e3
72.89
  • 72.89
  • 67.36
  • 66.73
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
6.41e3
  • 6.41e3
72.82
  • 72.82
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
6.48e3
  • 6.48e3
  • 7.64e3
72.55
  • 72.55
  • 67.61
AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
6.55e3
  • 6.55e3
72.23
  • 72.23
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
6.56e3
  • 6.56e3
72.20
  • 72.20
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
6.66e3
  • 6.66e3
71.77
  • 71.77
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
6.82e3
  • 6.82e3
71.10
  • 71.10
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
6.84e3
  • 6.84e3
71.01
  • 71.01
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
6.98e3
  • 6.98e3
70.40
  • 70.40
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
6.99e3
  • 6.99e3
  • 8.78e3
70.37
  • 70.37
  • 62.77
AEIR
  • AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
7.01e3
  • 7.01e3
70.31
  • 70.31
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
7.15e3
  • 7.15e3
69.70
  • 69.70
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
7.19e3
  • 7.19e3
69.52
  • 69.52
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
7.25e3
  • 7.25e3
69.28
  • 69.28
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
  • UBERON:0000068embryo stage
7.48e3
  • 7.48e3
  • 7.71e3
  • 7.94e3
  • 7.97e3
  • 8.00e3
68.31
  • 68.31
  • 67.31
  • 66.34
  • 66.20
  • 66.11
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
7.50e3
  • 7.50e3
68.21
  • 68.21
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
8.31e3
  • 8.31e3
64.79
  • 64.79
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
8.93e3
  • 8.93e3
62.15
  • 62.15
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
9.04e3
  • 9.04e3
61.67
  • 61.67
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Mammalia13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression
Bilateria24 species24 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000028600.

Cross-references

EnsemblENSSSCG00000028600 (SLC39A9)
HGNCHGNC:20182 (SLC39A9)
EMBLCT737420
Uniprot/SPTREMBLI3L754, I3L754_PIG

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