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S. scrofa Gene: SLC10A6 - ENSSSCG00000028952 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000028952
NameSLC10A6
Descriptionsolute carrier family 10 (sodium/bile acid cotransporter), member 6 [Source:HGNC Symbol;Acc:HGNC:30603]
OrganismSus scrofa (pig)
Synonym(s)soat
Orthologs(s)15 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
3.37e3
  • 3.37e3
  • 8.66e3
85.70
  • 85.70
  • 63.30
AEIR
  • AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
7.98e3
  • 7.98e3
66.18
  • 66.18
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
8.14e3
  • 8.14e3
65.50
  • 65.50
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018685nursing stage
8.53e3
  • 8.53e3
  • 1.32e4
63.85
  • 63.85
  • 43.93
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.01e4
  • 1.01e4
  • 1.12e4
  • 1.37e4
  • 1.69e4
57.07
  • 57.07
  • 52.54
  • 41.76
  • 28.22
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.04e4
  • 1.04e4
  • 1.26e4
55.80
  • 55.80
  • 46.74
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.11e4
  • 1.11e4
52.78
  • 52.78
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
1.12e4
  • 1.12e4
52.73
  • 52.73
AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
1.13e4
  • 1.13e4
52.28
  • 52.28
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
1.16e4
  • 1.16e4
50.98
  • 50.98
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.22e4
  • 1.22e4
  • 1.23e4
48.11
  • 48.11
  • 47.73
AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
  • 1.27e4
47.51
  • 47.51
  • 46.27
AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.25e4
  • 1.25e4
47.22
  • 47.22
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.26e4
  • 1.26e4
46.60
  • 46.60
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
1.27e4
  • 1.27e4
46.21
  • 46.21
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.28e4
  • 1.28e4
45.53
  • 45.53
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
1.29e4
  • 1.29e4
45.44
  • 45.44
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
1.31e4
  • 1.31e4
44.58
  • 44.58
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.33e4
  • 1.33e4
43.48
  • 43.48
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
1.35e4
  • 1.35e4
  • 1.39e4
42.62
  • 42.62
  • 40.96
AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.36e4
  • 1.36e4
42.24
  • 42.24
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.37e4
  • 1.37e4
41.74
  • 41.74
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.38e4
  • 1.38e4
41.51
  • 41.51
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.39e4
  • 1.39e4
  • 1.45e4
40.97
  • 40.97
  • 38.44
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.43e4
  • 1.43e4
  • 1.54e4
  • 1.85e4
39.27
  • 39.27
  • 34.83
  • 21.58
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
1.46e4
  • 1.46e4
  • 1.48e4
38.31
  • 38.31
  • 37.08
AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.47e4
  • 1.47e4
37.74
  • 37.74
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.49e4
  • 1.49e4
36.90
  • 36.90
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.53e4
  • 1.53e4
35.24
  • 35.24
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.54e4
  • 1.54e4
34.79
  • 34.79
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
1.58e4
  • 1.58e4
33.24
  • 33.24
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.58e4
  • 1.58e4
  • 1.68e4
33.10
  • 33.10
  • 28.96
AEIR
  • AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.61e4
  • 1.61e4
31.89
  • 31.89
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.61e4
  • 1.61e4
  • 1.64e4
  • 1.69e4
  • 1.70e4
31.61
  • 31.61
  • 30.54
  • 28.48
  • 28.04
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.68e4
  • 1.68e4
28.75
  • 28.75
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.76e4
  • 1.76e4
25.48
  • 25.48
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.83e4
  • 1.83e4
  • 2.06e4
22.57
  • 22.57
  • 12.74
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Tetrapoda15 species15 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000028952.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression
Eukaryota2 genesCompare expression

Paralogy information comes from OMA : ENSSSCG00000028952.

Cross-references

EnsemblENSSSCG00000028952 (SLC10A6)
HGNCHGNC:30603 (SLC10A6)
EMBLFP312925
Uniprot/SPTREMBLI3LIG7, I3LIG7_PIG

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