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S. scrofa Gene: - ENSSSCG00000029102 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000029102
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)24 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
3.44e3
  • 3.44e3
85.40
  • 85.40
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
4.58e3
  • 4.58e3
80.59
  • 80.59
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
4.96e3
  • 4.96e3
  • 6.25e3
  • 6.40e3
78.96
  • 78.96
  • 73.52
  • 72.88
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
5.05e3
  • 5.05e3
  • 5.19e3
  • 6.46e3
  • 7.43e3
  • 8.65e3
78.60
  • 78.60
  • 78.01
  • 72.60
  • 68.52
  • 63.33
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
5.27e3
  • 5.27e3
77.68
  • 77.68
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
6.15e3
  • 6.15e3
73.93
  • 73.93
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
6.24e3
  • 6.24e3
73.55
  • 73.55
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
6.41e3
  • 6.41e3
72.84
  • 72.84
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
6.45e3
  • 6.45e3
  • 6.79e3
  • 9.40e3
72.68
  • 72.68
  • 71.24
  • 60.15
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
6.46e3
  • 6.46e3
  • 1.31e4
72.64
  • 72.64
  • 44.41
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
6.49e3
  • 6.49e3
  • 6.54e3
  • 8.10e3
  • 9.10e3
72.50
  • 72.50
  • 72.27
  • 65.67
  • 61.43
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
6.54e3
  • 6.54e3
72.29
  • 72.29
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
7.21e3
  • 7.21e3
69.42
  • 69.42
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
7.22e3
  • 7.22e3
69.40
  • 69.40
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018685nursing stage
7.53e3
  • 7.53e3
  • 8.70e3
68.10
  • 68.10
  • 63.11
AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
8.20e3
  • 8.20e3
  • 1.02e4
65.25
  • 65.25
  • 56.77
AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
8.27e3
  • 8.27e3
  • 1.24e4
64.96
  • 64.96
  • 47.51
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
8.41e3
  • 8.41e3
64.37
  • 64.37
AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
8.52e3
  • 8.52e3
63.88
  • 63.88
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
8.64e3
  • 8.64e3
  • 1.00e4
  • 1.26e4
63.37
  • 63.37
  • 57.57
  • 46.73
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
8.70e3
  • 8.70e3
  • 1.00e4
63.11
  • 63.11
  • 57.55
AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
9.26e3
  • 9.26e3
60.77
  • 60.77
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
9.67e3
  • 9.67e3
59.01
  • 59.01
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
9.87e3
  • 9.87e3
  • 1.13e4
  • 1.17e4
58.18
  • 58.18
  • 52.15
  • 50.38
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
1.03e4
  • 1.03e4
56.30
  • 56.30
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.03e4
  • 1.03e4
56.18
  • 56.18
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.04e4
  • 1.04e4
55.99
  • 55.99
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
1.05e4
  • 1.05e4
55.43
  • 55.43
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
1.12e4
  • 1.12e4
52.49
  • 52.49
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
1.25e4
  • 1.25e4
47.08
  • 47.08
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.27e4
  • 1.27e4
46.32
  • 46.32
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.27e4
  • 1.27e4
46.30
  • 46.30
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
1.28e4
  • 1.28e4
  • 1.40e4
45.59
  • 45.59
  • 40.80
AEIR
  • AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
1.30e4
  • 1.30e4
44.98
  • 44.98
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
1.31e4
  • 1.31e4
44.62
  • 44.62
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.37e4
  • 1.37e4
42.03
  • 42.03
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
1.39e4
  • 1.39e4
40.96
  • 40.96
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.40e4
  • 1.40e4
40.64
  • 40.64
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria12 species13 genesCompare expression
Theria13 species14 genesCompare expression
Amniota15 species16 genesCompare expression
Tetrapoda16 species17 genesCompare expression
Euteleostomi17 species18 genesCompare expression
Bilateria23 species24 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000029102.

Cross-references

EnsemblENSSSCG00000029102
EMBLCU928026
Uniprot/SPTREMBLF1RXA9, F1RXA9_PIG

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