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S. scrofa Gene: - ENSSSCG00000029441 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000029441
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)38 orthologs
Paralog(s)10 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
148
  • 148
99.38
  • 99.38
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
4.68e3
  • 4.68e3
  • 1.56e4
  • 1.73e4
  • 1.82e4
80.15
  • 80.15
  • 33.76
  • 26.59
  • 22.68
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
1.15e4
  • 1.15e4
  • 1.24e4
51.39
  • 51.39
  • 47.51
AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.40e4
  • 1.40e4
40.52
  • 40.52
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
1.49e4
  • 1.49e4
  • 2.01e4
36.91
  • 36.91
  • 14.74
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.49e4
  • 1.49e4
36.75
  • 36.75
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.68e4
  • 1.68e4
  • 1.76e4
28.59
  • 28.59
  • 25.37
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.73e4
  • 1.73e4
  • 2.16e4
26.67
  • 26.67
  • 8.32
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
1.73e4
  • 1.73e4
  • 1.89e4
  • 1.97e4
26.47
  • 26.47
  • 19.87
  • 16.67
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
1.77e4
  • 1.77e4
24.92
  • 24.92
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.80e4
  • 1.80e4
23.64
  • 23.64
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.81e4
  • 1.81e4
23.07
  • 23.07
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.83e4
  • 1.83e4
22.36
  • 22.36
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.86e4
  • 1.86e4
  • 2.06e4
21.10
  • 21.10
  • 12.74
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
1.87e4
  • 1.87e4
20.65
  • 20.65
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
1.88e4
  • 1.88e4
20.31
  • 20.31
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.91e4
  • 1.91e4
19.03
  • 19.03
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria3 species3 genesCompare expression
Boreoeutheria9 species9 genesCompare expression
Mammalia10 species10 genesCompare expression
Amniota12 species19 genesCompare expression
Tetrapoda13 species20 genesCompare expression
Euteleostomi14 species28 genesCompare expression
Bilateria20 species38 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000029441.

Paralogs (same species)

Cross-references

EnsemblENSSSCG00000029441
EMBLCU896583
Uniprot/SPTREMBLF1SS65, F1SS65_PIG

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