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S. scrofa Gene: - ENSSSCG00000029662 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000029662
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)51 orthologs
Paralog(s)5 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
2.07e3
  • 2.07e3
91.21
  • 91.21
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
2.90e3
  • 2.90e3
  • 3.61e3
  • 4.04e3
87.70
  • 87.70
  • 84.69
  • 82.90
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
3.06e3
  • 3.06e3
87.04
  • 87.04
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
3.41e3
  • 3.41e3
  • 3.74e3
  • 4.64e3
85.54
  • 85.54
  • 84.15
  • 80.36
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
3.52e3
  • 3.52e3
85.06
  • 85.06
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
3.62e3
  • 3.62e3
84.67
  • 84.67
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
4.26e3
  • 4.26e3
81.96
  • 81.96
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
4.32e3
  • 4.32e3
81.67
  • 81.67
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
4.48e3
  • 4.48e3
80.99
  • 80.99
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
4.54e3
  • 4.54e3
80.78
  • 80.78
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
4.78e3
  • 4.78e3
  • 5.94e3
79.75
  • 79.75
  • 74.83
AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
4.91e3
  • 4.91e3
79.18
  • 79.18
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000112sexually immature stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
4.98e3
  • 4.98e3
  • 5.11e3
  • 5.85e3
  • 8.66e3
78.90
  • 78.90
  • 78.36
  • 75.21
  • 63.30
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
5.14e3
  • 5.14e3
  • 7.76e3
78.23
  • 78.23
  • 67.11
AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0034919juvenile stage
5.47e3
  • 5.47e3
76.81
  • 76.81
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
5.61e3
  • 5.61e3
76.22
  • 76.22
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
5.80e3
  • 5.80e3
75.43
  • 75.43
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
5.83e3
  • 5.83e3
  • 8.56e3
  • 8.83e3
  • 1.29e4
  • 1.63e4
75.31
  • 75.31
  • 63.73
  • 62.57
  • 45.14
  • 31.03
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
5.89e3
  • 5.89e3
  • 6.99e3
  • 1.20e4
75.04
  • 75.04
  • 70.38
  • 49.22
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
6.30e3
  • 6.30e3
  • 1.27e4
73.30
  • 73.30
  • 46.36
AEIR
  • AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
6.34e3
  • 6.34e3
73.15
  • 73.15
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
6.49e3
  • 6.49e3
72.47
  • 72.47
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
6.63e3
  • 6.63e3
71.90
  • 71.90
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
6.69e3
  • 6.69e3
71.64
  • 71.64
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
6.76e3
  • 6.76e3
71.33
  • 71.33
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
6.90e3
  • 6.90e3
70.74
  • 70.74
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0034919juvenile stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018685nursing stage
7.92e3
  • 7.92e3
  • 7.93e3
  • 9.32e3
66.43
  • 66.43
  • 66.40
  • 60.48
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
8.30e3
  • 8.30e3
  • 1.12e4
64.84
  • 64.84
  • 52.43
AEIR
  • AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
8.87e3
  • 8.87e3
62.40
  • 62.40
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
8.91e3
  • 8.91e3
  • 8.93e3
  • 1.24e4
62.23
  • 62.23
  • 62.17
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
9.14e3
  • 9.14e3
61.28
  • 61.28
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
9.16e3
  • 9.16e3
61.18
  • 61.18
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
9.47e3
  • 9.47e3
  • 1.08e4
59.86
  • 59.86
  • 54.04
AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
9.55e3
  • 9.55e3
59.50
  • 59.50
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
1.03e4
  • 1.03e4
56.47
  • 56.47
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.03e4
  • 1.03e4
  • 1.20e4
  • 1.26e4
56.44
  • 56.44
  • 49.05
  • 46.55
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
1.06e4
  • 1.06e4
55.20
  • 55.20
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.10e4
  • 1.10e4
53.53
  • 53.53
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.10e4
  • 1.10e4
53.40
  • 53.40
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.11e4
  • 1.11e4
53.04
  • 53.04
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.15e4
  • 1.15e4
51.11
  • 51.11
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
1.15e4
  • 1.15e4
51.06
  • 51.06
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.19e4
  • 1.19e4
49.68
  • 49.68
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
1.20e4
  • 1.20e4
49.03
  • 49.03
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.23e4
  • 1.23e4
47.68
  • 47.68
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.27e4
  • 1.27e4
  • 1.28e4
46.34
  • 46.34
  • 45.67
AEIR
  • AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.33e4
  • 1.33e4
43.78
  • 43.78
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Mammalia12 species13 genesCompare expression
Tetrapoda13 species51 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000029662.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Tetrapoda5 genesCompare expression

Paralogy information comes from OMA : ENSSSCG00000029662.

Cross-references

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