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S. scrofa Gene: SPATC1L - ENSSSCG00000029847 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000029847
NameSPATC1L
Descriptionspermatogenesis and centriole associated 1-like [Source:HGNC Symbol;Acc:HGNC:1298]
OrganismSus scrofa (pig)
Synonym(s)c21orf56
Orthologs(s)13 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
3.65e3
  • 3.65e3
  • 9.15e3
84.54
  • 84.54
  • 61.20
AEIR
  • AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
8.17e3
  • 8.17e3
65.36
  • 65.36
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.46e4
  • 1.46e4
37.98
  • 37.98
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.56e4
  • 1.56e4
  • 1.58e4
  • 1.63e4
  • 1.77e4
33.77
  • 33.77
  • 33.10
  • 30.96
  • 25.09
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.57e4
  • 1.57e4
33.52
  • 33.52
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.59e4
  • 1.59e4
32.76
  • 32.76
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.61e4
  • 1.61e4
31.66
  • 31.66
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018685nursing stage
  • UBERON:0000113post-juvenile adult stage
1.61e4
  • 1.61e4
  • 1.95e4
31.63
  • 31.63
  • 17.24
AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.66e4
  • 1.66e4
29.62
  • 29.62
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
1.69e4
  • 1.69e4
28.44
  • 28.44
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
1.70e4
  • 1.70e4
  • 1.96e4
27.73
  • 27.73
  • 16.71
AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.82e4
  • 1.82e4
22.85
  • 22.85
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.85e4
  • 1.85e4
21.75
  • 21.75
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
1.85e4
  • 1.85e4
21.59
  • 21.59
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.87e4
  • 1.87e4
20.83
  • 20.83
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
2.01e4
  • 2.01e4
  • 2.18e4
14.97
  • 14.97
  • 7.71
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Theria12 species12 genesCompare expression
Mammalia13 species13 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000029847.

Cross-references

EnsemblENSSSCG00000029847 (SPATC1L)
HGNCHGNC:1298 (SPATC1L)
EMBLFP236737
Uniprot/SPTREMBLI3LH35, I3LH35_PIG

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