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S. scrofa Gene: - ENSSSCG00000029945 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000029945
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)24 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.35e3
  • 1.35e3
  • 2.11e3
  • 2.14e3
94.26
  • 94.26
  • 91.07
  • 90.92
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.63e3
  • 1.63e3
93.12
  • 93.12
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
3.70e3
  • 3.70e3
84.32
  • 84.32
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
3.81e3
  • 3.81e3
  • 7.18e3
83.86
  • 83.86
  • 69.58
AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
5.45e3
  • 5.45e3
76.90
  • 76.90
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
5.97e3
  • 5.97e3
74.70
  • 74.70
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
7.02e3
  • 7.02e3
70.25
  • 70.25
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
7.47e3
  • 7.47e3
  • 9.34e3
  • 1.05e4
68.34
  • 68.34
  • 60.41
  • 55.67
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
7.62e3
  • 7.62e3
67.71
  • 67.71
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
8.03e3
  • 8.03e3
  • 1.38e4
65.94
  • 65.94
  • 41.37
AEIR
  • AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
8.32e3
  • 8.32e3
64.74
  • 64.74
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
8.55e3
  • 8.55e3
  • 1.05e4
  • 1.18e4
  • 1.62e4
  • 1.67e4
63.76
  • 63.76
  • 55.32
  • 49.83
  • 31.36
  • 29.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
8.74e3
  • 8.74e3
  • 1.27e4
62.97
  • 62.97
  • 46.14
AEIR
  • AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
9.21e3
  • 9.21e3
60.97
  • 60.97
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
9.42e3
  • 9.42e3
  • 1.07e4
  • 1.24e4
60.08
  • 60.08
  • 54.73
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
9.64e3
  • 9.64e3
59.14
  • 59.14
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
9.64e3
  • 9.64e3
  • 1.15e4
  • 1.22e4
  • 1.82e4
59.13
  • 59.13
  • 51.05
  • 48.35
  • 22.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
1.02e4
  • 1.02e4
  • 1.19e4
56.94
  • 56.94
  • 49.61
AEIR
  • AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.10e4
  • 1.10e4
53.23
  • 53.23
AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
1.12e4
  • 1.12e4
52.39
  • 52.39
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.14e4
  • 1.14e4
51.78
  • 51.78
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
1.16e4
  • 1.16e4
51.01
  • 51.01
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.17e4
  • 1.17e4
50.44
  • 50.44
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.18e4
  • 1.18e4
  • 1.42e4
50.13
  • 50.13
  • 39.76
AEIR
  • AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.19e4
  • 1.19e4
49.57
  • 49.57
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.19e4
  • 1.19e4
49.37
  • 49.37
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.21e4
  • 1.21e4
48.74
  • 48.74
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
1.27e4
  • 1.27e4
46.27
  • 46.27
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
1.29e4
  • 1.29e4
45.20
  • 45.20
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.31e4
  • 1.31e4
44.34
  • 44.34
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
1.33e4
  • 1.33e4
43.76
  • 43.76
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018685nursing stage
  • UBERON:0000113post-juvenile adult stage
1.33e4
  • 1.33e4
  • 1.34e4
43.62
  • 43.62
  • 43.38
AEIR
  • AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
1.34e4
  • 1.34e4
43.03
  • 43.03
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.38e4
  • 1.38e4
41.66
  • 41.66
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
1.38e4
  • 1.38e4
41.40
  • 41.40
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.45e4
  • 1.45e4
38.35
  • 38.35
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
1.46e4
  • 1.46e4
38.14
  • 38.14
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.47e4
  • 1.47e4
  • 1.51e4
37.56
  • 37.56
  • 35.80
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.56e4
  • 1.56e4
  • 1.57e4
33.84
  • 33.84
  • 33.47
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species18 genesCompare expression
Bilateria24 species24 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000029945.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Opisthokonta1 geneCompare expression

Paralogy information comes from OMA : ENSSSCG00000029945.

Cross-references

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