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S. scrofa Gene: - ENSSSCG00000030000 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000030000
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)22 orthologs
Paralog(s)10 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
6.62e3
  • 6.62e3
  • 1.09e4
  • 1.09e4
71.94
  • 71.94
  • 53.89
  • 53.65
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
7.32e3
  • 7.32e3
68.96
  • 68.96
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
  • UBERON:0000068embryo stage
8.17e3
  • 8.17e3
  • 8.26e3
  • 8.97e3
  • 1.20e4
  • 1.24e4
65.36
  • 65.36
  • 65.00
  • 62.00
  • 49.08
  • 47.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
8.65e3
  • 8.65e3
63.35
  • 63.35
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
8.77e3
  • 8.77e3
62.85
  • 62.85
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.02e4
  • 1.02e4
56.84
  • 56.84
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
1.06e4
  • 1.06e4
55.22
  • 55.22
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.08e4
  • 1.08e4
54.13
  • 54.13
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
1.14e4
  • 1.14e4
51.68
  • 51.68
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
1.23e4
  • 1.23e4
47.89
  • 47.89
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
  • 1.30e4
47.51
  • 47.51
  • 44.94
AEIR
  • AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
1.26e4
  • 1.26e4
46.79
  • 46.79
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.33e4
  • 1.33e4
  • 1.35e4
  • 1.45e4
43.70
  • 43.70
  • 42.82
  • 38.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.37e4
  • 1.37e4
41.73
  • 41.73
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.41e4
  • 1.41e4
40.04
  • 40.04
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018685nursing stage
1.44e4
  • 1.44e4
  • 1.61e4
38.89
  • 38.89
  • 31.75
AEIR
  • AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.45e4
  • 1.45e4
38.68
  • 38.68
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.47e4
  • 1.47e4
37.61
  • 37.61
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.48e4
  • 1.48e4
37.13
  • 37.13
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
1.49e4
  • 1.49e4
36.79
  • 36.79
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.50e4
  • 1.50e4
36.60
  • 36.60
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.50e4
  • 1.50e4
36.31
  • 36.31
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.50e4
  • 1.50e4
36.27
  • 36.27
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
1.51e4
  • 1.51e4
  • 1.56e4
35.98
  • 35.98
  • 33.79
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.53e4
  • 1.53e4
  • 1.77e4
35.26
  • 35.26
  • 25.05
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.58e4
  • 1.58e4
  • 1.62e4
  • 1.75e4
  • 1.77e4
33.09
  • 33.09
  • 31.12
  • 25.95
  • 24.94
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
1.60e4
  • 1.60e4
  • 1.62e4
32.04
  • 32.04
  • 31.28
AEIR
  • AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
1.74e4
  • 1.74e4
26.27
  • 26.27
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.75e4
  • 1.75e4
25.98
  • 25.98
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.79e4
  • 1.79e4
24.18
  • 24.18
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression
Bilateria22 species22 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000030000.

Paralogs (same species)

Cross-references

EnsemblENSSSCG00000030000
Uniprot/SPTREMBLI3LE85, I3LE85_PIG

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