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S. scrofa Gene: - ENSSSCG00000030310 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000030310
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)1 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.00e4
  • 1.00e4
57.60
  • 57.60
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.12e4
  • 1.12e4
  • 1.58e4
  • 2.06e4
52.44
  • 52.44
  • 32.88
  • 12.74
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.12e4
  • 1.12e4
52.33
  • 52.33
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.13e4
  • 1.13e4
  • 1.29e4
  • 1.74e4
52.28
  • 52.28
  • 45.18
  • 26.12
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.14e4
  • 1.14e4
51.50
  • 51.50
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.16e4
  • 1.16e4
  • 1.41e4
  • 1.69e4
50.64
  • 50.64
  • 40.35
  • 28.22
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
1.19e4
  • 1.19e4
  • 1.37e4
  • 1.41e4
  • 1.84e4
49.63
  • 49.63
  • 42.04
  • 40.15
  • 21.93
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
1.21e4
  • 1.21e4
48.64
  • 48.64
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
1.24e4
  • 1.24e4
47.56
  • 47.56
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
  • 1.24e4
47.51
  • 47.51
  • 47.33
AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
1.27e4
  • 1.27e4
  • 1.53e4
46.38
  • 46.38
  • 35.34
AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.28e4
  • 1.28e4
45.93
  • 45.93
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.30e4
  • 1.30e4
44.89
  • 44.89
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.32e4
  • 1.32e4
43.84
  • 43.84
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018685nursing stage
  • UBERON:0000113post-juvenile adult stage
1.35e4
  • 1.35e4
  • 1.50e4
42.91
  • 42.91
  • 36.30
AEIR
  • AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.36e4
  • 1.36e4
42.31
  • 42.31
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
1.37e4
  • 1.37e4
42.08
  • 42.08
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.38e4
  • 1.38e4
41.56
  • 41.56
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
1.41e4
  • 1.41e4
40.45
  • 40.45
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
1.41e4
  • 1.41e4
40.11
  • 40.11
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.43e4
  • 1.43e4
  • 1.86e4
39.37
  • 39.37
  • 21.29
AEIR
  • AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
1.45e4
  • 1.45e4
38.65
  • 38.65
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.46e4
  • 1.46e4
38.25
  • 38.25
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.52e4
  • 1.52e4
35.76
  • 35.76
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.55e4
  • 1.55e4
34.32
  • 34.32
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0034919juvenile stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.59e4
  • 1.59e4
  • 1.60e4
  • 1.65e4
  • 1.92e4
32.52
  • 32.52
  • 32.07
  • 30.15
  • 18.68
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.63e4
  • 1.63e4
30.82
  • 30.82
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
1.69e4
  • 1.69e4
28.51
  • 28.51
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.77e4
  • 1.77e4
25.09
  • 25.09
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.86e4
  • 1.86e4
21.19
  • 21.19
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria1 species1 geneCompare expression

Orthology information comes from OMA : ENSSSCG00000030310.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Metazoa1 geneCompare expression
Eukaryota2 genesCompare expression

Paralogy information comes from OMA : ENSSSCG00000030310.

Cross-references

EnsemblENSSSCG00000030310
EMBLCU928319
Uniprot/SPTREMBLI3LPJ2, I3LPJ2_PIG

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