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X. tropicalis Gene: topbp1 - ENSXETG00000001854 - Xenopus tropicalis (western clawed frog)

General information

Ensembl IDENSXETG00000001854
Nametopbp1
Descriptiontopoisomerase (DNA) II binding protein 1 [Source:Xenbase;Acc:XB-GENE-990637]
OrganismXenopus tropicalis (western clawed frog)
Orthologs(s)24 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • UBERON:0000106zygote stage
  • XAO:1000019NF stage 9 (Xenopus)
  • XAO:1000018NF stage 8 (Xenopus)
  • XAO:1000017NF stage 7 (Xenopus)
  • UBERON:00072322 cell stage
  • XAO:1000029NF stage 6.5 (Xenopus)
  • XAO:1000020NF stage 10 (Xenopus)
  • UBERON:00072368 cell stage
  • XAO:1000030NF stage 10.25 (Xenopus)
  • XAO:1000031NF stage 10.5 (Xenopus)
  • UBERON:00072334 cell stage
  • XAO:1000021NF stage 11 (Xenopus)
  • XAO:1000032NF stage 11.5 (Xenopus)
  • XAO:1000022NF stage 12 (Xenopus)
  • XAO:1000016NF stage 6 (32-cell) (Xenopus)
  • XAO:1000033NF stage 12.5 (Xenopus)
  • XAO:1000023NF stage 13 (Xenopus)
  • XAO:1000015NF stage 5 (16-cell) (Xenopus)
  • XAO:1000036NF stage 20 (Xenopus)
  • XAO:1000037NF stage 21 (Xenopus)
  • XAO:1000034NF stage 18 (Xenopus)
  • XAO:1000024NF stage 14 (Xenopus)
  • XAO:1000041NF stage 25 (Xenopus)
  • XAO:1000027NF stage 17 (Xenopus)
  • XAO:1000039NF stage 23 (Xenopus)
  • XAO:1000025NF stage 15 (Xenopus)
  • XAO:1000040NF stage 24 (Xenopus)
  • XAO:1000026NF stage 16 (Xenopus)
  • XAO:1000038NF stage 22 (Xenopus)
  • XAO:1000035NF stage 19 (Xenopus)
  • XAO:1000045NF stage 29 and 30 (Xenopus)
  • XAO:1000043NF stage 27 (Xenopus)
  • XAO:1000042NF stage 26 (Xenopus)
  • XAO:1000046NF stage 31 (Xenopus)
  • XAO:1000047NF stage 32 (Xenopus)
  • XAO:1000048NF stage 33 and 34 (Xenopus)
  • XAO:1000044NF stage 28 (Xenopus)
  • XAO:1000050NF stage 37 and 38 (Xenopus)
  • XAO:1000051NF stage 39 (Xenopus)
  • XAO:1000049NF stage 35 and 36 (Xenopus)
  • XAO:1000052NF stage 40 (Xenopus)
3.93e3
  • 3.93e3
  • 3.97e3
  • 4.15e3
  • 4.20e3
  • 4.20e3
  • 4.21e3
  • 4.21e3
  • 4.46e3
  • 4.52e3
  • 4.62e3
  • 4.63e3
  • 4.70e3
  • 4.89e3
  • 4.93e3
  • 4.93e3
  • 5.18e3
  • 5.27e3
  • 5.29e3
  • 5.42e3
  • 5.44e3
  • 5.48e3
  • 5.50e3
  • 5.68e3
  • 5.70e3
  • 5.73e3
  • 5.75e3
  • 5.76e3
  • 5.79e3
  • 5.86e3
  • 6.27e3
  • 6.57e3
  • 6.61e3
  • 6.62e3
  • 6.73e3
  • 6.88e3
  • 7.29e3
  • 7.39e3
  • 7.63e3
  • 8.32e3
  • 8.48e3
  • 8.74e3
78.88
  • 78.88
  • 78.66
  • 77.70
  • 77.43
  • 77.43
  • 77.38
  • 77.33
  • 75.99
  • 75.66
  • 75.13
  • 75.07
  • 74.70
  • 73.71
  • 73.48
  • 73.47
  • 72.15
  • 71.67
  • 71.57
  • 70.84
  • 70.72
  • 70.54
  • 70.42
  • 69.46
  • 69.35
  • 69.17
  • 69.07
  • 69.00
  • 68.83
  • 68.47
  • 66.30
  • 64.68
  • 64.45
  • 64.39
  • 63.81
  • 62.97
  • 60.78
  • 60.24
  • 58.93
  • 55.27
  • 54.37
  • 53.01
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000025egg cell
  • UBERON:0000113post-juvenile adult stage
4.43e3
  • 4.43e3
76.19
  • 76.19
AEIR
  • AEIR
UBERON:0000307blastula
  • XAO:1000019NF stage 9 (Xenopus)
  • XAO:1000018NF stage 8 (Xenopus)
4.69e3
  • 4.69e3
  • 6.02e3
74.77
  • 74.77
  • 67.63
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
5.06e3
  • 5.06e3
72.77
  • 72.77
AEIR
  • AEIR
UBERON:0004734gastrula
  • XAO:1000022NF stage 12 (Xenopus)
  • XAO:1000020NF stage 10 (Xenopus)
  • UBERON:0000109gastrula stage
5.54e3
  • 5.54e3
  • 5.84e3
  • 7.72e3
70.18
  • 70.18
  • 68.59
  • 58.47
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
6.31e3
  • 6.31e3
66.06
  • 66.06
AEIR
  • AEIR
UBERON:0000080mesonephros
  • UBERON:0000113post-juvenile adult stage
9.68e3
  • 9.68e3
47.92
  • 47.92
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
9.92e3
  • 9.92e3
46.63
  • 46.63
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.01e4
  • 1.01e4
45.93
  • 45.93
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
1.03e4
  • 1.03e4
44.60
  • 44.60
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
1.11e4
  • 1.11e4
40.47
  • 40.47
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression
Bilateria24 species24 genesCompare expression

Orthology information comes from OMA : ENSXETG00000001854.

Cross-references

EnsemblENSXETG00000001854 (topbp1)
XenbaseXB-GENE-990637 (topbp1)
EMBLAAMC01073267, AAMC01073268
Uniprot/SPTREMBLF6XFW7, F6XFW7_XENTR

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