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X. tropicalis Gene: scara3 - ENSXETG00000002137 - Xenopus tropicalis (western clawed frog)

General information

Ensembl IDENSXETG00000002137
Namescara3
Descriptionscavenger receptor class A, member 3 [Source:Xenbase;Acc:XB-GENE-956084]
OrganismXenopus tropicalis (western clawed frog)
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
5.32e3
  • 5.32e3
71.39
  • 71.39
AEIR
  • AEIR
UBERON:0000080mesonephros
  • UBERON:0000113post-juvenile adult stage
7.12e3
  • 7.12e3
61.70
  • 61.70
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
7.55e3
  • 7.55e3
59.41
  • 59.41
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
8.05e3
  • 8.05e3
56.68
  • 56.68
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
8.37e3
  • 8.37e3
54.99
  • 54.99
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.28e4
  • 1.28e4
31.08
  • 31.08
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
1.33e4
  • 1.33e4
28.44
  • 28.44
AEIR
  • AEIR
UBERON:0000922embryo
  • XAO:1000052NF stage 40 (Xenopus)
  • XAO:1000051NF stage 39 (Xenopus)
  • XAO:1000049NF stage 35 and 36 (Xenopus)
  • XAO:1000050NF stage 37 and 38 (Xenopus)
  • XAO:1000048NF stage 33 and 34 (Xenopus)
  • XAO:1000047NF stage 32 (Xenopus)
  • XAO:1000046NF stage 31 (Xenopus)
  • XAO:1000044NF stage 28 (Xenopus)
1.45e4
  • 1.45e4
  • 1.50e4
  • 1.50e4
  • 1.52e4
  • 1.57e4
  • 1.59e4
  • 1.62e4
  • 1.65e4
21.82
  • 21.82
  • 19.43
  • 19.24
  • 18.12
  • 15.58
  • 14.23
  • 13.09
  • 11.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
1.63e4
  • 1.63e4
12.13
  • 12.13
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression

Orthology information comes from OMA : ENSXETG00000002137.

Cross-references

EnsemblENSXETG00000002137 (scara3)
XenbaseXB-GENE-956084 (scara3)
EMBLAAMC01077936
Uniprot/SPTREMBLF6QPZ8, F6QPZ8_XENTR

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