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X. tropicalis Gene: tmed1 - ENSXETG00000002260 - Xenopus tropicalis (western clawed frog)

General information

Ensembl IDENSXETG00000002260
Nametmed1
Descriptiontransmembrane p24 trafficking protein 1 [Source:Xenbase;Acc:XB-GENE-1017173]
OrganismXenopus tropicalis (western clawed frog)
Synonym(s)xp24g1, xp24gamma1
Orthologs(s)31 orthologs
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • XAO:1000023NF stage 13 (Xenopus)
  • XAO:1000042NF stage 26 (Xenopus)
  • XAO:1000024NF stage 14 (Xenopus)
  • XAO:1000043NF stage 27 (Xenopus)
  • XAO:1000025NF stage 15 (Xenopus)
  • XAO:1000026NF stage 16 (Xenopus)
  • XAO:1000044NF stage 28 (Xenopus)
  • XAO:1000041NF stage 25 (Xenopus)
  • XAO:1000022NF stage 12 (Xenopus)
  • XAO:1000035NF stage 19 (Xenopus)
  • XAO:1000033NF stage 12.5 (Xenopus)
  • XAO:1000032NF stage 11.5 (Xenopus)
  • XAO:1000027NF stage 17 (Xenopus)
  • XAO:1000038NF stage 22 (Xenopus)
  • XAO:1000045NF stage 29 and 30 (Xenopus)
  • XAO:1000046NF stage 31 (Xenopus)
  • XAO:1000021NF stage 11 (Xenopus)
  • XAO:1000040NF stage 24 (Xenopus)
  • XAO:1000049NF stage 35 and 36 (Xenopus)
  • XAO:1000039NF stage 23 (Xenopus)
  • XAO:1000034NF stage 18 (Xenopus)
  • XAO:1000047NF stage 32 (Xenopus)
  • XAO:1000036NF stage 20 (Xenopus)
  • XAO:1000048NF stage 33 and 34 (Xenopus)
  • XAO:1000050NF stage 37 and 38 (Xenopus)
  • XAO:1000031NF stage 10.5 (Xenopus)
  • XAO:1000051NF stage 39 (Xenopus)
  • XAO:1000037NF stage 21 (Xenopus)
  • XAO:1000052NF stage 40 (Xenopus)
  • XAO:1000030NF stage 10.25 (Xenopus)
  • XAO:1000020NF stage 10 (Xenopus)
  • UBERON:0000106zygote stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • XAO:1000015NF stage 5 (16-cell) (Xenopus)
  • XAO:1000019NF stage 9 (Xenopus)
  • UBERON:00072368 cell stage
  • XAO:1000016NF stage 6 (32-cell) (Xenopus)
  • XAO:1000029NF stage 6.5 (Xenopus)
  • XAO:1000017NF stage 7 (Xenopus)
  • XAO:1000018NF stage 8 (Xenopus)
2.30e3
  • 2.30e3
  • 2.32e3
  • 2.34e3
  • 2.34e3
  • 2.42e3
  • 2.44e3
  • 2.45e3
  • 2.46e3
  • 2.47e3
  • 2.48e3
  • 2.52e3
  • 2.54e3
  • 2.57e3
  • 2.57e3
  • 2.62e3
  • 2.64e3
  • 2.64e3
  • 2.72e3
  • 2.72e3
  • 2.76e3
  • 2.79e3
  • 2.86e3
  • 2.92e3
  • 3.03e3
  • 3.04e3
  • 3.05e3
  • 3.12e3
  • 3.20e3
  • 3.26e3
  • 3.59e3
  • 4.51e3
  • 4.91e3
  • 5.27e3
  • 5.61e3
  • 5.74e3
  • 5.91e3
  • 6.03e3
  • 6.63e3
  • 7.01e3
  • 7.19e3
  • 7.30e3
87.65
  • 87.65
  • 87.51
  • 87.41
  • 87.41
  • 87.00
  • 86.88
  • 86.81
  • 86.79
  • 86.70
  • 86.67
  • 86.44
  • 86.36
  • 86.16
  • 86.16
  • 85.92
  • 85.81
  • 85.80
  • 85.39
  • 85.39
  • 85.15
  • 85.01
  • 84.62
  • 84.31
  • 83.71
  • 83.65
  • 83.62
  • 83.22
  • 82.77
  • 82.47
  • 80.70
  • 75.72
  • 73.57
  • 71.67
  • 69.80
  • 69.13
  • 68.23
  • 67.58
  • 64.34
  • 62.30
  • 61.32
  • 60.72
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • XAO:1000022NF stage 12 (Xenopus)
  • XAO:1000020NF stage 10 (Xenopus)
2.89e3
  • 2.89e3
  • 4.73e3
  • 5.49e3
84.48
  • 84.48
  • 74.54
  • 70.48
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
3.20e3
  • 3.20e3
82.82
  • 82.82
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
4.65e3
  • 4.65e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0000080mesonephros
  • UBERON:0000113post-juvenile adult stage
6.20e3
  • 6.20e3
66.66
  • 66.66
AEIR
  • AEIR
UBERON:0000307blastula
  • XAO:1000018NF stage 8 (Xenopus)
  • XAO:1000019NF stage 9 (Xenopus)
6.40e3
  • 6.40e3
  • 7.83e3
65.56
  • 65.56
  • 57.86
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
6.63e3
  • 6.63e3
64.34
  • 64.34
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
7.05e3
  • 7.05e3
62.06
  • 62.06
AEIR
  • AEIR
CL:0000025egg cell
  • UBERON:0000113post-juvenile adult stage
7.92e3
  • 7.92e3
57.42
  • 57.42
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
8.31e3
  • 8.31e3
55.28
  • 55.28
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
8.51e3
  • 8.51e3
54.20
  • 54.20
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species18 genesCompare expression
Bilateria24 species31 genesCompare expression

Orthology information comes from OMA : ENSXETG00000002260.

Paralogs (same species)

Paralogy information comes from OMA : ENSXETG00000002260.

Cross-references

EnsemblENSXETG00000002260 (tmed1)
XenbaseXB-GENE-1017173 (tmed1)
EMBLAAMC01118745
Uniprot/SPTREMBLG8JLT4, G8JLT4_XENTR

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