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X. tropicalis Gene: gata6 - ENSXETG00000003144 - Xenopus tropicalis (western clawed frog)

General information

Ensembl IDENSXETG00000003144
Namegata6
DescriptionGATA binding protein 6 [Source:Xenbase;Acc:XB-GENE-485063]
OrganismXenopus tropicalis (western clawed frog)
Synonym(s)gata-6, gata6a, gata6b, pnr, tgata6, xgata-6, xgata6
Orthologs(s)12 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
  • XAO:1000048NF stage 33 and 34 (Xenopus)
777
  • 777
  • 9.29e3
95.82
  • 95.82
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • XAO:1000022NF stage 12 (Xenopus)
  • XAO:1000020NF stage 10 (Xenopus)
  • UBERON:0000109gastrula stage
1.86e3
  • 1.86e3
  • 3.26e3
  • 4.71e3
90.03
  • 90.03
  • 82.45
  • 74.67
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • XAO:1000030NF stage 10.25 (Xenopus)
  • XAO:1000021NF stage 11 (Xenopus)
  • XAO:1000031NF stage 10.5 (Xenopus)
  • XAO:1000020NF stage 10 (Xenopus)
  • XAO:1000032NF stage 11.5 (Xenopus)
  • XAO:1000051NF stage 39 (Xenopus)
  • XAO:1000022NF stage 12 (Xenopus)
  • XAO:1000050NF stage 37 and 38 (Xenopus)
  • XAO:1000023NF stage 13 (Xenopus)
  • XAO:1000019NF stage 9 (Xenopus)
  • XAO:1000033NF stage 12.5 (Xenopus)
  • XAO:1000035NF stage 19 (Xenopus)
  • XAO:1000026NF stage 16 (Xenopus)
  • XAO:1000024NF stage 14 (Xenopus)
  • XAO:1000025NF stage 15 (Xenopus)
  • XAO:1000038NF stage 22 (Xenopus)
  • XAO:1000039NF stage 23 (Xenopus)
  • XAO:1000041NF stage 25 (Xenopus)
  • XAO:1000049NF stage 35 and 36 (Xenopus)
  • XAO:1000027NF stage 17 (Xenopus)
  • XAO:1000040NF stage 24 (Xenopus)
  • XAO:1000034NF stage 18 (Xenopus)
  • XAO:1000036NF stage 20 (Xenopus)
  • XAO:1000042NF stage 26 (Xenopus)
  • XAO:1000048NF stage 33 and 34 (Xenopus)
  • XAO:1000043NF stage 27 (Xenopus)
  • XAO:1000047NF stage 32 (Xenopus)
  • XAO:1000045NF stage 29 and 30 (Xenopus)
  • XAO:1000044NF stage 28 (Xenopus)
  • XAO:1000046NF stage 31 (Xenopus)
  • XAO:1000037NF stage 21 (Xenopus)
  • XAO:1000052NF stage 40 (Xenopus)
  • XAO:1000018NF stage 8 (Xenopus)
  • UBERON:0000106zygote stage
  • UBERON:0000109gastrula stage
  • XAO:1000015NF stage 5 (16-cell) (Xenopus)
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • XAO:1000029NF stage 6.5 (Xenopus)
  • UBERON:00072368 cell stage
  • XAO:1000017NF stage 7 (Xenopus)
  • XAO:1000016NF stage 6 (32-cell) (Xenopus)
2.35e3
  • 2.35e3
  • 2.46e3
  • 2.51e3
  • 2.62e3
  • 2.93e3
  • 2.93e3
  • 3.07e3
  • 3.24e3
  • 3.28e3
  • 3.30e3
  • 3.38e3
  • 3.42e3
  • 3.48e3
  • 3.53e3
  • 3.55e3
  • 3.65e3
  • 3.84e3
  • 4.05e3
  • 4.10e3
  • 4.14e3
  • 4.18e3
  • 4.39e3
  • 4.44e3
  • 4.55e3
  • 4.72e3
  • 4.73e3
  • 4.77e3
  • 4.96e3
  • 5.00e3
  • 5.25e3
  • 5.32e3
  • 6.14e3
  • 8.04e3
  • 8.88e3
  • 9.30e3
  • 9.39e3
  • 9.46e3
  • 9.58e3
  • 9.90e3
  • 9.90e3
  • 1.03e4
  • 1.19e4
87.34
  • 87.34
  • 86.78
  • 86.52
  • 85.91
  • 84.24
  • 84.23
  • 83.50
  • 82.59
  • 82.38
  • 82.25
  • 81.81
  • 81.59
  • 81.26
  • 81.03
  • 80.92
  • 80.39
  • 79.36
  • 78.21
  • 77.95
  • 77.70
  • 77.51
  • 76.40
  • 76.14
  • 75.54
  • 74.61
  • 74.56
  • 74.33
  • 73.35
  • 73.09
  • 71.78
  • 71.41
  • 66.99
  • 56.77
  • 52.25
  • 49.97
  • 49.47
  • 49.13
  • 48.48
  • 46.73
  • 46.72
  • 44.57
  • 35.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
2.98e3
  • 2.98e3
84.00
  • 84.00
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
3.00e3
  • 3.00e3
83.84
  • 83.84
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000113post-juvenile adult stage
8.13e3
  • 8.13e3
56.24
  • 56.24
AEIR
  • AEIR
UBERON:0007005cardiac mesoderm
  • XAO:1000042NF stage 26 (Xenopus)
  • XAO:1000047NF stage 32 (Xenopus)
  • XAO:1000038NF stage 22 (Xenopus)
9.29e3
  • 9.29e3
  • 9.29e3
  • 9.29e3
50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
XAO:0004104neural plate border (Xenopus)
  • XAO:1000024NF stage 14 (Xenopus)
  • XAO:1000025NF stage 15 (Xenopus)
9.29e3
  • 9.29e3
  • 9.29e3
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0003894liver primordium
  • XAO:1000038NF stage 22 (Xenopus)
  • XAO:1000047NF stage 32 (Xenopus)
9.29e3
  • 9.29e3
  • 9.29e3
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0000925endoderm
  • XAO:1000038NF stage 22 (Xenopus)
  • XAO:1000047NF stage 32 (Xenopus)
  • XAO:1000020NF stage 10 (Xenopus)
  • XAO:1000021NF stage 11 (Xenopus)
  • XAO:1000030NF stage 10.25 (Xenopus)
  • XAO:1000042NF stage 26 (Xenopus)
  • XAO:1000031NF stage 10.5 (Xenopus)
9.29e3
  • 9.29e3
  • 9.29e3
  • 9.29e3
  • 9.29e3
  • 9.29e3
  • 9.30e3
  • 9.30e3
50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001041foregut
  • XAO:1000038NF stage 22 (Xenopus)
  • XAO:1000047NF stage 32 (Xenopus)
9.29e3
  • 9.29e3
  • 9.29e3
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0001045midgut
  • XAO:1000038NF stage 22 (Xenopus)
  • XAO:1000047NF stage 32 (Xenopus)
9.29e3
  • 9.29e3
  • 9.29e3
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0001046hindgut
  • XAO:1000038NF stage 22 (Xenopus)
  • XAO:1000047NF stage 32 (Xenopus)
9.29e3
  • 9.29e3
  • 9.29e3
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0002423hepatobiliary system
  • XAO:1000038NF stage 22 (Xenopus)
  • XAO:1000047NF stage 32 (Xenopus)
9.29e3
  • 9.29e3
  • 9.29e3
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0008835hepatic diverticulum
  • XAO:1000038NF stage 22 (Xenopus)
  • XAO:1000047NF stage 32 (Xenopus)
9.29e3
  • 9.29e3
  • 9.29e3
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0001016nervous system
  • XAO:1000045NF stage 29 and 30 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001675trigeminal ganglion
  • XAO:1000048NF stage 33 and 34 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002346neurectoderm
  • XAO:1000024NF stage 14 (Xenopus)
  • XAO:1000025NF stage 15 (Xenopus)
  • XAO:1000036NF stage 20 (Xenopus)
9.29e3
  • 9.29e3
  • 9.29e3
  • 9.29e3
50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003084heart primordium
  • XAO:1000038NF stage 22 (Xenopus)
  • XAO:1000047NF stage 32 (Xenopus)
9.29e3
  • 9.29e3
  • 9.29e3
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0003114pharyngeal arch 3
  • XAO:1000045NF stage 29 and 30 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0003117pharyngeal arch 6
  • XAO:1000045NF stage 29 and 30 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0004128optic vesicle
  • XAO:1000045NF stage 29 and 30 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0007097chordo neural hinge
  • XAO:1000048NF stage 33 and 34 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0015178somite border
  • XAO:1000048NF stage 33 and 34 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
XAO:0000281vegetal yolk mass (Xenopus)
  • XAO:1000020NF stage 10 (Xenopus)
  • XAO:1000021NF stage 11 (Xenopus)
  • XAO:1000030NF stage 10.25 (Xenopus)
  • XAO:1000031NF stage 10.5 (Xenopus)
9.29e3
  • 9.29e3
  • 9.29e3
  • 9.29e3
  • 9.29e3
50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
XAO:0004209anterior neural ridge (Xenopus)
  • XAO:1000036NF stage 20 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • XAO:1000045NF stage 29 and 30 (Xenopus)
  • XAO:1000048NF stage 33 and 34 (Xenopus)
9.29e3
  • 9.29e3
  • 9.29e3
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0001890forebrain
  • XAO:1000045NF stage 29 and 30 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001891midbrain
  • XAO:1000045NF stage 29 and 30 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002028hindbrain
  • XAO:1000045NF stage 29 and 30 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000955brain
  • XAO:1000045NF stage 29 and 30 (Xenopus)
  • XAO:1000048NF stage 33 and 34 (Xenopus)
9.29e3
  • 9.29e3
  • 9.30e3
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • XAO:1000036NF stage 20 (Xenopus)
  • XAO:1000045NF stage 29 and 30 (Xenopus)
9.29e3
  • 9.29e3
  • 9.29e3
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0003075neural plate
  • XAO:1000036NF stage 20 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0008896post-hyoid pharyngeal arch
  • XAO:1000045NF stage 29 and 30 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0008897fin
  • XAO:1000045NF stage 29 and 30 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0010162post-anal tail tip
  • XAO:1000048NF stage 33 and 34 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002120pronephros
  • XAO:1000048NF stage 33 and 34 (Xenopus)
9.30e3
  • 9.30e3
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • XAO:1000048NF stage 33 and 34 (Xenopus)
9.30e3
  • 9.30e3
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0003051ear vesicle
  • XAO:1000045NF stage 29 and 30 (Xenopus)
  • XAO:1000048NF stage 33 and 34 (Xenopus)
9.30e3
  • 9.30e3
  • 9.30e3
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0002108small intestine
  • XAO:1000075NF stage 63 (Xenopus)
  • UBERON:0000113post-juvenile adult stage
9.30e3
  • 9.30e3
  • 9.31e3
49.95
  • 49.95
  • 49.91
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • XAO:1000018NF stage 8 (Xenopus)
  • XAO:1000019NF stage 9 (Xenopus)
9.61e3
  • 9.61e3
  • 1.02e4
48.33
  • 48.33
  • 44.93
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.06e4
  • 1.06e4
43.11
  • 43.11
AEIR
  • AEIR
CL:0000025egg cell
  • UBERON:0000113post-juvenile adult stage
1.07e4
  • 1.07e4
42.29
  • 42.29
AEIR
  • AEIR
UBERON:0000080mesonephros
  • UBERON:0000113post-juvenile adult stage
1.08e4
  • 1.08e4
41.99
  • 41.99
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Cross-references

EnsemblENSXETG00000003144 (gata6)
XenbaseXB-GENE-485063 (gata6)
EMBLAAMC01030574, AAMC01030575, AY260735
Uniprot/SPTREMBLQ7T1R5, Q7T1R5_XENTR

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