X. tropicalis Gene: - ENSXETG00000003215 - Xenopus tropicalis (western clawed frog)

General information

Ensembl IDENSXETG00000003215
Name-
Description-
OrganismXenopus tropicalis (western clawed frog)
Orthologs(s)17 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
8.79e3
  • 8.79e3
52.73
  • 52.73
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000106zygote stage
  • UBERON:00072322 cell stage
  • XAO:1000029NF stage 6.5 (Xenopus)
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • XAO:1000017NF stage 7 (Xenopus)
  • XAO:1000015NF stage 5 (16-cell) (Xenopus)
  • XAO:1000016NF stage 6 (32-cell) (Xenopus)
  • XAO:1000018NF stage 8 (Xenopus)
  • XAO:1000019NF stage 9 (Xenopus)
  • XAO:1000040NF stage 24 (Xenopus)
  • XAO:1000023NF stage 13 (Xenopus)
  • XAO:1000038NF stage 22 (Xenopus)
  • XAO:1000035NF stage 19 (Xenopus)
  • XAO:1000034NF stage 18 (Xenopus)
  • XAO:1000044NF stage 28 (Xenopus)
  • XAO:1000042NF stage 26 (Xenopus)
  • XAO:1000045NF stage 29 and 30 (Xenopus)
  • XAO:1000037NF stage 21 (Xenopus)
  • XAO:1000025NF stage 15 (Xenopus)
  • XAO:1000047NF stage 32 (Xenopus)
  • XAO:1000050NF stage 37 and 38 (Xenopus)
  • XAO:1000051NF stage 39 (Xenopus)
1.03e4
  • 1.03e4
  • 1.05e4
  • 1.07e4
  • 1.08e4
  • 1.09e4
  • 1.09e4
  • 1.13e4
  • 1.15e4
  • 1.27e4
  • 1.38e4
  • 1.52e4
  • 1.57e4
  • 1.58e4
  • 1.61e4
  • 1.62e4
  • 1.63e4
  • 1.65e4
  • 1.66e4
  • 1.66e4
  • 1.67e4
  • 1.67e4
  • 1.69e4
  • 1.72e4
44.83
  • 44.83
  • 43.33
  • 42.24
  • 41.74
  • 41.35
  • 41.13
  • 39.29
  • 37.99
  • 31.69
  • 25.83
  • 18.07
  • 15.41
  • 14.90
  • 13.63
  • 13.11
  • 12.20
  • 11.22
  • 10.76
  • 10.69
  • 10.21
  • 10.05
  • 9.21
  • 7.73
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000025egg cell
  • UBERON:0000113post-juvenile adult stage
1.03e4
  • 1.03e4
44.40
  • 44.40
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.05e4
  • 1.05e4
43.47
  • 43.47
AEIR
  • AEIR
UBERON:0000307blastula
  • XAO:1000018NF stage 8 (Xenopus)
  • XAO:1000019NF stage 9 (Xenopus)
1.11e4
  • 1.11e4
  • 1.41e4
40.31
  • 40.31
  • 24.39
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
1.14e4
  • 1.14e4
38.61
  • 38.61
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.22e4
  • 1.22e4
34.35
  • 34.35
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
1.25e4
  • 1.25e4
32.96
  • 32.96
AEIR
  • AEIR
UBERON:0000080mesonephros
  • UBERON:0000113post-juvenile adult stage
1.53e4
  • 1.53e4
17.94
  • 17.94
AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
1.71e4
  • 1.71e4
8.04
  • 8.04
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Xenopus2 genesCompare expression

Paralogy information comes from OMA : ENSXETG00000003215.

Cross-references

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