X. tropicalis Gene: foxf1 - ENSXETG00000003565 - Xenopus tropicalis (western clawed frog)

General information

Ensembl IDENSXETG00000003565
Namefoxf1
Descriptionforkhead box F1 [Source:Xenbase;Acc:XB-GENE-478922]
OrganismXenopus tropicalis (western clawed frog)
Synonym(s)acdmpv, fkhl5, freac1, xfd-13
Orthologs(s)15 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • XAO:1000049NF stage 35 and 36 (Xenopus)
  • XAO:1000050NF stage 37 and 38 (Xenopus)
  • XAO:1000051NF stage 39 (Xenopus)
  • XAO:1000052NF stage 40 (Xenopus)
  • XAO:1000048NF stage 33 and 34 (Xenopus)
  • XAO:1000042NF stage 26 (Xenopus)
  • XAO:1000047NF stage 32 (Xenopus)
  • XAO:1000043NF stage 27 (Xenopus)
  • XAO:1000046NF stage 31 (Xenopus)
  • XAO:1000045NF stage 29 and 30 (Xenopus)
  • XAO:1000044NF stage 28 (Xenopus)
  • XAO:1000041NF stage 25 (Xenopus)
  • XAO:1000039NF stage 23 (Xenopus)
  • XAO:1000038NF stage 22 (Xenopus)
  • XAO:1000040NF stage 24 (Xenopus)
  • XAO:1000035NF stage 19 (Xenopus)
  • XAO:1000036NF stage 20 (Xenopus)
  • XAO:1000037NF stage 21 (Xenopus)
  • XAO:1000034NF stage 18 (Xenopus)
  • XAO:1000027NF stage 17 (Xenopus)
  • XAO:1000031NF stage 10.5 (Xenopus)
  • XAO:1000025NF stage 15 (Xenopus)
  • XAO:1000021NF stage 11 (Xenopus)
  • XAO:1000030NF stage 10.25 (Xenopus)
  • XAO:1000026NF stage 16 (Xenopus)
  • XAO:1000024NF stage 14 (Xenopus)
  • XAO:1000032NF stage 11.5 (Xenopus)
  • XAO:1000023NF stage 13 (Xenopus)
  • XAO:1000022NF stage 12 (Xenopus)
  • XAO:1000020NF stage 10 (Xenopus)
  • XAO:1000033NF stage 12.5 (Xenopus)
  • XAO:1000019NF stage 9 (Xenopus)
  • XAO:1000018NF stage 8 (Xenopus)
2.79e3
  • 2.79e3
  • 2.95e3
  • 3.21e3
  • 3.30e3
  • 3.39e3
  • 3.68e3
  • 3.71e3
  • 3.72e3
  • 3.90e3
  • 3.98e3
  • 4.08e3
  • 4.34e3
  • 4.64e3
  • 4.81e3
  • 5.05e3
  • 6.34e3
  • 6.90e3
  • 7.29e3
  • 7.30e3
  • 7.60e3
  • 7.80e3
  • 7.80e3
  • 7.91e3
  • 7.95e3
  • 8.17e3
  • 8.40e3
  • 8.66e3
  • 8.95e3
  • 9.08e3
  • 9.60e3
  • 9.74e3
  • 1.38e4
  • 1.47e4
84.98
  • 84.98
  • 84.14
  • 82.71
  • 82.23
  • 81.77
  • 80.18
  • 80.05
  • 80.02
  • 79.02
  • 78.59
  • 78.07
  • 76.64
  • 75.03
  • 74.13
  • 72.85
  • 65.90
  • 62.89
  • 60.77
  • 60.72
  • 59.10
  • 58.06
  • 58.06
  • 57.42
  • 57.26
  • 56.07
  • 54.82
  • 53.39
  • 51.88
  • 51.16
  • 48.35
  • 47.60
  • 25.84
  • 20.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • XAO:1000022NF stage 12 (Xenopus)
  • XAO:1000020NF stage 10 (Xenopus)
5.37e3
  • 5.37e3
  • 8.91e3
  • 1.47e4
71.14
  • 71.14
  • 52.05
  • 20.74
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002108small intestine
  • XAO:1000075NF stage 63 (Xenopus)
  • XAO:1000078NF stage 66 (Xenopus)
8.84e3
  • 8.84e3
  • 9.31e3
52.45
  • 52.45
  • 49.94
AEIR
  • AEIR
  • AEIR
UBERON:0001905pineal body
  • XAO:1000048NF stage 33 and 34 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002346neurectoderm
  • XAO:1000037NF stage 21 (Xenopus)
  • XAO:1000027NF stage 17 (Xenopus)
9.29e3
  • 9.29e3
  • 9.29e3
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
XAO:0000310anterior neural fold (Xenopus)
  • XAO:1000037NF stage 21 (Xenopus)
  • XAO:1000027NF stage 17 (Xenopus)
9.29e3
  • 9.29e3
  • 9.29e3
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
XAO:0004104neural plate border (Xenopus)
  • XAO:1000037NF stage 21 (Xenopus)
  • XAO:1000027NF stage 17 (Xenopus)
9.29e3
  • 9.29e3
  • 9.29e3
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0003112olfactory region
  • XAO:1000048NF stage 33 and 34 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0004017periocular mesenchyme
  • XAO:1000048NF stage 33 and 34 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0005308nephrostome
  • XAO:1000048NF stage 33 and 34 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
XAO:0004209anterior neural ridge (Xenopus)
  • XAO:1000027NF stage 17 (Xenopus)
  • XAO:1000037NF stage 21 (Xenopus)
9.29e3
  • 9.29e3
  • 9.29e3
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • XAO:1000048NF stage 33 and 34 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001891midbrain
  • XAO:1000048NF stage 33 and 34 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002342neural crest
  • XAO:1000037NF stage 21 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0005310pronephric nephron tubule
  • XAO:1000048NF stage 33 and 34 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002028hindbrain
  • XAO:1000048NF stage 33 and 34 (Xenopus)
9.30e3
  • 9.30e3
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • XAO:1000048NF stage 33 and 34 (Xenopus)
9.30e3
  • 9.30e3
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0003051ear vesicle
  • XAO:1000048NF stage 33 and 34 (Xenopus)
9.30e3
  • 9.30e3
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
9.97e3
  • 9.97e3
46.34
  • 46.34
AEIR
  • AEIR
UBERON:0000080mesonephros
  • UBERON:0000113post-juvenile adult stage
1.21e4
  • 1.21e4
34.92
  • 34.92
AEIR
  • AEIR
UBERON:0000307blastula
  • XAO:1000019NF stage 9 (Xenopus)
1.30e4
  • 1.30e4
30.27
  • 30.27
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Tetrapoda14 species14 genesCompare expression
Euteleostomi15 species15 genesCompare expression

Orthology information comes from OMA : ENSXETG00000003565.

Cross-references

EnsemblENSXETG00000003565 (foxf1)
XenbaseXB-GENE-478922 (foxf1)
EMBLAAMC01039115
Uniprot/SPTREMBLF7B682, F7B682_XENTR

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