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X. tropicalis Gene: cdx4 - ENSXETG00000004589 - Xenopus tropicalis (western clawed frog)

General information

Ensembl IDENSXETG00000004589
Namecdx4
Descriptioncaudal type homeobox 4 [Source:Xenbase;Acc:XB-GENE-482787]
OrganismXenopus tropicalis (western clawed frog)
Synonym(s)xcad-3, xcad3, xtcad3
Orthologs(s)14 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • XAO:1000031NF stage 10.5 (Xenopus)
  • XAO:1000021NF stage 11 (Xenopus)
  • XAO:1000030NF stage 10.25 (Xenopus)
  • XAO:1000032NF stage 11.5 (Xenopus)
  • XAO:1000022NF stage 12 (Xenopus)
  • XAO:1000033NF stage 12.5 (Xenopus)
  • XAO:1000020NF stage 10 (Xenopus)
  • XAO:1000023NF stage 13 (Xenopus)
  • XAO:1000024NF stage 14 (Xenopus)
  • XAO:1000025NF stage 15 (Xenopus)
  • XAO:1000026NF stage 16 (Xenopus)
  • XAO:1000027NF stage 17 (Xenopus)
  • XAO:1000034NF stage 18 (Xenopus)
  • XAO:1000035NF stage 19 (Xenopus)
  • XAO:1000036NF stage 20 (Xenopus)
  • XAO:1000019NF stage 9 (Xenopus)
  • XAO:1000037NF stage 21 (Xenopus)
  • XAO:1000038NF stage 22 (Xenopus)
  • XAO:1000040NF stage 24 (Xenopus)
  • XAO:1000039NF stage 23 (Xenopus)
  • XAO:1000041NF stage 25 (Xenopus)
  • XAO:1000044NF stage 28 (Xenopus)
  • XAO:1000042NF stage 26 (Xenopus)
  • XAO:1000045NF stage 29 and 30 (Xenopus)
  • XAO:1000043NF stage 27 (Xenopus)
  • XAO:1000018NF stage 8 (Xenopus)
  • XAO:1000015NF stage 5 (16-cell) (Xenopus)
  • XAO:1000046NF stage 31 (Xenopus)
  • UBERON:00072368 cell stage
  • XAO:1000047NF stage 32 (Xenopus)
  • XAO:1000016NF stage 6 (32-cell) (Xenopus)
  • XAO:1000048NF stage 33 and 34 (Xenopus)
  • XAO:1000049NF stage 35 and 36 (Xenopus)
  • XAO:1000052NF stage 40 (Xenopus)
  • XAO:1000051NF stage 39 (Xenopus)
  • XAO:1000050NF stage 37 and 38 (Xenopus)
585
  • 585
  • 618
  • 655
  • 689
  • 766
  • 906
  • 1.02e3
  • 1.09e3
  • 1.40e3
  • 1.63e3
  • 1.70e3
  • 2.34e3
  • 2.61e3
  • 2.87e3
  • 3.69e3
  • 3.83e3
  • 4.15e3
  • 5.31e3
  • 7.34e3
  • 7.60e3
  • 7.61e3
  • 1.04e4
  • 1.07e4
  • 1.07e4
  • 1.09e4
  • 1.15e4
  • 1.20e4
  • 1.20e4
  • 1.30e4
  • 1.36e4
  • 1.39e4
  • 1.44e4
  • 1.53e4
  • 1.55e4
  • 1.57e4
  • 1.57e4
96.86
  • 96.86
  • 96.68
  • 96.48
  • 96.30
  • 95.88
  • 95.13
  • 94.54
  • 94.16
  • 92.48
  • 91.22
  • 90.88
  • 87.41
  • 85.97
  • 84.54
  • 80.16
  • 79.39
  • 77.66
  • 71.43
  • 60.52
  • 59.14
  • 59.08
  • 44.28
  • 42.69
  • 42.52
  • 41.29
  • 38.01
  • 35.36
  • 35.29
  • 29.96
  • 26.87
  • 25.47
  • 22.56
  • 17.49
  • 16.75
  • 15.70
  • 15.61
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • XAO:1000022NF stage 12 (Xenopus)
  • XAO:1000020NF stage 10 (Xenopus)
  • UBERON:0000109gastrula stage
1.06e3
  • 1.06e3
  • 6.53e3
  • 7.30e3
94.30
  • 94.30
  • 64.85
  • 60.73
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • XAO:1000047NF stage 32 (Xenopus)
  • UBERON:0000110neurula stage
  • XAO:1000022NF stage 12 (Xenopus)
  • XAO:1000024NF stage 14 (Xenopus)
  • UBERON:0000068embryo stage
  • XAO:1000036NF stage 20 (Xenopus)
  • XAO:1000039NF stage 23 (Xenopus)
  • XAO:1000044NF stage 28 (Xenopus)
4.65e3
  • 4.65e3
  • 9.29e3
  • 9.29e3
  • 9.29e3
  • 9.29e3
  • 9.30e3
  • 9.30e3
  • 9.30e3
75.00
  • 75.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • XAO:1000045NF stage 29 and 30 (Xenopus)
  • XAO:1000048NF stage 33 and 34 (Xenopus)
4.65e3
  • 4.65e3
  • 9.29e3
75.00
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0003076posterior neural tube
  • XAO:1000036NF stage 20 (Xenopus)
  • XAO:1000048NF stage 33 and 34 (Xenopus)
  • XAO:1000045NF stage 29 and 30 (Xenopus)
9.29e3
  • 9.29e3
  • 9.29e3
  • 9.29e3
50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006071caudal region
  • XAO:1000036NF stage 20 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0005724roof plate spinal cord region
  • XAO:1000045NF stage 29 and 30 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
XAO:0000069ventral marginal zone (Xenopus)
  • XAO:1000031NF stage 10.5 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
XAO:0000083involuted dorsal mesoderm (Xenopus)
  • XAO:1000022NF stage 12 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
XAO:0000084involuted ventral mesoderm (Xenopus)
  • XAO:1000022NF stage 12 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
XAO:0000109posterior wall of neurenteric canal (Xenopus)
  • XAO:1000048NF stage 33 and 34 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0003057chordal neural plate
  • XAO:1000025NF stage 15 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0004879marginal zone of embryo
  • XAO:1000020NF stage 10 (Xenopus)
  • XAO:1000021NF stage 11 (Xenopus)
9.29e3
  • 9.29e3
  • 9.29e3
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
XAO:0000070ventro-lateral marginal zone (Xenopus)
  • XAO:1000031NF stage 10.5 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
XAO:0000071dorso-lateral marginal zone (Xenopus)
  • XAO:1000031NF stage 10.5 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0003075neural plate
  • XAO:1000024NF stage 14 (Xenopus)
9.30e3
  • 9.30e3
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000307blastula
  • XAO:1000019NF stage 9 (Xenopus)
1.20e4
  • 1.20e4
35.26
  • 35.26
AEIR
  • AEIR
CL:0000025egg cell
  • UBERON:0000113post-juvenile adult stage
1.25e4
  • 1.25e4
32.60
  • 32.60
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
1.53e4
  • 1.53e4
17.53
  • 17.53
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Cross-references

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