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X. tropicalis Gene: sox10 - ENSXETG00000006348 - Xenopus tropicalis (western clawed frog)

General information

Ensembl IDENSXETG00000006348
Namesox10
DescriptionSRY (sex determining region Y)-box 10 [Source:Xenbase;Acc:XB-GENE-480304]
OrganismXenopus tropicalis (western clawed frog)
Synonym(s)dom, ws4
Orthologs(s)16 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • XAO:1000024NF stage 14 (Xenopus)
  • XAO:1000023NF stage 13 (Xenopus)
  • XAO:1000026NF stage 16 (Xenopus)
  • XAO:1000025NF stage 15 (Xenopus)
  • XAO:1000027NF stage 17 (Xenopus)
  • XAO:1000033NF stage 12.5 (Xenopus)
  • XAO:1000035NF stage 19 (Xenopus)
  • XAO:1000034NF stage 18 (Xenopus)
  • XAO:1000036NF stage 20 (Xenopus)
  • XAO:1000037NF stage 21 (Xenopus)
  • XAO:1000022NF stage 12 (Xenopus)
  • XAO:1000038NF stage 22 (Xenopus)
  • XAO:1000040NF stage 24 (Xenopus)
  • XAO:1000039NF stage 23 (Xenopus)
  • XAO:1000041NF stage 25 (Xenopus)
  • XAO:1000043NF stage 27 (Xenopus)
  • XAO:1000045NF stage 29 and 30 (Xenopus)
  • XAO:1000048NF stage 33 and 34 (Xenopus)
  • XAO:1000051NF stage 39 (Xenopus)
  • XAO:1000042NF stage 26 (Xenopus)
  • XAO:1000044NF stage 28 (Xenopus)
  • XAO:1000050NF stage 37 and 38 (Xenopus)
  • XAO:1000046NF stage 31 (Xenopus)
  • XAO:1000052NF stage 40 (Xenopus)
  • XAO:1000047NF stage 32 (Xenopus)
  • XAO:1000049NF stage 35 and 36 (Xenopus)
  • XAO:1000032NF stage 11.5 (Xenopus)
  • XAO:1000029NF stage 6.5 (Xenopus)
  • XAO:1000017NF stage 7 (Xenopus)
  • UBERON:0000106zygote stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • XAO:1000018NF stage 8 (Xenopus)
  • XAO:1000021NF stage 11 (Xenopus)
  • UBERON:00072368 cell stage
  • XAO:1000016NF stage 6 (32-cell) (Xenopus)
  • XAO:1000019NF stage 9 (Xenopus)
2.13e3
  • 2.13e3
  • 2.17e3
  • 2.49e3
  • 2.50e3
  • 2.89e3
  • 2.98e3
  • 3.35e3
  • 3.51e3
  • 4.34e3
  • 4.88e3
  • 5.16e3
  • 5.70e3
  • 6.09e3
  • 6.14e3
  • 6.24e3
  • 6.98e3
  • 7.21e3
  • 7.36e3
  • 7.37e3
  • 7.41e3
  • 7.48e3
  • 7.51e3
  • 7.59e3
  • 7.71e3
  • 7.89e3
  • 8.58e3
  • 8.85e3
  • 1.21e4
  • 1.23e4
  • 1.29e4
  • 1.29e4
  • 1.30e4
  • 1.31e4
  • 1.32e4
  • 1.36e4
  • 1.38e4
  • 1.43e4
88.52
  • 88.52
  • 88.34
  • 86.63
  • 86.58
  • 84.47
  • 83.98
  • 81.97
  • 81.10
  • 76.65
  • 73.74
  • 72.26
  • 69.33
  • 67.26
  • 66.97
  • 66.42
  • 62.47
  • 61.20
  • 60.42
  • 60.34
  • 60.16
  • 59.75
  • 59.62
  • 59.15
  • 58.54
  • 57.57
  • 53.87
  • 52.40
  • 34.87
  • 33.57
  • 30.44
  • 30.43
  • 29.91
  • 29.31
  • 28.87
  • 27.10
  • 25.58
  • 22.84
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001444subdivision of head
  • XAO:1000044NF stage 28 (Xenopus)
4.65e3
  • 4.65e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • XAO:1000044NF stage 28 (Xenopus)
4.65e3
  • 4.65e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0002342neural crest
  • XAO:1000034NF stage 18 (Xenopus)
  • XAO:1000035NF stage 19 (Xenopus)
  • XAO:1000023NF stage 13 (Xenopus)
  • XAO:1000024NF stage 14 (Xenopus)
  • XAO:1000026NF stage 16 (Xenopus)
  • XAO:1000027NF stage 17 (Xenopus)
  • XAO:1000037NF stage 21 (Xenopus)
  • XAO:1000041NF stage 25 (Xenopus)
  • XAO:1000025NF stage 15 (Xenopus)
  • XAO:1000036NF stage 20 (Xenopus)
4.65e3
  • 4.65e3
  • 4.65e3
  • 9.29e3
  • 9.29e3
  • 9.29e3
  • 9.29e3
  • 9.29e3
  • 9.29e3
  • 9.30e3
  • 9.30e3
75.00
  • 75.00
  • 75.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003083trunk neural crest
  • XAO:1000044NF stage 28 (Xenopus)
  • XAO:1000041NF stage 25 (Xenopus)
  • XAO:1000035NF stage 19 (Xenopus)
4.65e3
  • 4.65e3
  • 9.29e3
  • 9.29e3
75.00
  • 75.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003099cranial neural crest
  • XAO:1000044NF stage 28 (Xenopus)
  • XAO:1000041NF stage 25 (Xenopus)
  • XAO:1000035NF stage 19 (Xenopus)
4.65e3
  • 4.65e3
  • 9.29e3
  • 9.29e3
75.00
  • 75.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • XAO:1000044NF stage 28 (Xenopus)
6.97e3
  • 6.97e3
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
7.19e3
  • 7.19e3
61.30
  • 61.30
AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
7.95e3
  • 7.95e3
57.23
  • 57.23
AEIR
  • AEIR
UBERON:0014892skeletal muscle organ
  • UBERON:0000113post-juvenile adult stage
9.17e3
  • 9.17e3
50.68
  • 50.68
AEIR
  • AEIR
UBERON:0003069otic placode
  • XAO:1000041NF stage 25 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001049neural tube
  • XAO:1000035NF stage 19 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002100trunk
  • XAO:1000044NF stage 28 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0003075neural plate
  • XAO:1000034NF stage 18 (Xenopus)
  • XAO:1000035NF stage 19 (Xenopus)
9.29e3
  • 9.29e3
  • 9.29e3
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
XAO:0000310anterior neural fold (Xenopus)
  • XAO:1000035NF stage 19 (Xenopus)
9.29e3
  • 9.29e3
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
1.00e4
  • 1.00e4
46.01
  • 46.01
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.14e4
  • 1.14e4
38.58
  • 38.58
AEIR
  • AEIR
CL:0000025egg cell
  • UBERON:0000113post-juvenile adult stage
1.24e4
  • 1.24e4
33.50
  • 33.50
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.24e4
  • 1.24e4
33.38
  • 33.38
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
1.31e4
  • 1.31e4
29.41
  • 29.41
AEIR
  • AEIR
UBERON:0000307blastula
  • XAO:1000019NF stage 9 (Xenopus)
1.33e4
  • 1.33e4
28.26
  • 28.26
AEIR
  • AEIR
UBERON:0000080mesonephros
  • UBERON:0000113post-juvenile adult stage
1.38e4
  • 1.38e4
25.58
  • 25.58
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Tetrapoda15 species15 genesCompare expression
Euteleostomi16 species16 genesCompare expression

Orthology information comes from OMA : ENSXETG00000006348.

Cross-references

EnsemblENSXETG00000006348 (sox10)
XenbaseXB-GENE-480304 (sox10)
EMBLBC136047
Uniprot/SWISSPROTA4IIJ8, SOX10_XENTR

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