X. tropicalis Gene: clp1 - ENSXETG00000007088 - Xenopus tropicalis (western clawed frog)

General information

Ensembl IDENSXETG00000007088
Nameclp1
Descriptioncleavage and polyadenylation factor I subunit 1 [Source:Xenbase;Acc:XB-GENE-1008970]
OrganismXenopus tropicalis (western clawed frog)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • UBERON:00072368 cell stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • XAO:1000016NF stage 6 (32-cell) (Xenopus)
  • XAO:1000015NF stage 5 (16-cell) (Xenopus)
  • XAO:1000025NF stage 15 (Xenopus)
  • XAO:1000035NF stage 19 (Xenopus)
  • XAO:1000026NF stage 16 (Xenopus)
  • XAO:1000045NF stage 29 and 30 (Xenopus)
  • XAO:1000044NF stage 28 (Xenopus)
  • XAO:1000048NF stage 33 and 34 (Xenopus)
  • XAO:1000052NF stage 40 (Xenopus)
  • UBERON:0000106zygote stage
  • UBERON:0000109gastrula stage
1.88e3
  • 1.88e3
  • 1.90e3
  • 1.91e3
  • 1.96e3
  • 1.98e3
  • 3.80e3
  • 3.84e3
  • 4.00e3
  • 4.01e3
  • 4.26e3
  • 5.02e3
  • 5.61e3
  • 8.63e3
  • 9.24e3
89.84299
  • 89.84299
  • 89.74012
  • 89.69139
  • 89.36990
  • 89.30157
  • 79.44916
  • 79.19928
  • 78.36492
  • 78.31619
  • 76.94429
  • 72.80796
  • 69.64846
  • 53.30087
  • 49.97022
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • XAO:1000018NF stage 8 (Xenopus)
  • XAO:1000019NF stage 9 (Xenopus)
2.15e3
  • 2.15e3
  • 2.25e3
88.36492
  • 88.36492
  • 87.82680
AEIR
  • AEIR
  • AEIR
CL:0000025egg cell
  • UBERON:0000113post-juvenile adult stage
2.44e3
  • 2.44e3
86.80022
  • 86.80022
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
2.64e3
  • 2.64e3
85.71036
  • 85.71036
AEIR
  • AEIR
UBERON:0004734gastrula
  • XAO:1000020NF stage 10 (Xenopus)
  • XAO:1000022NF stage 12 (Xenopus)
  • UBERON:0000109gastrula stage
3.02e3
  • 3.02e3
  • 3.54e3
  • 4.31e3
83.66692
  • 83.66692
  • 80.83920
  • 76.65864
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
6.21e3
  • 6.21e3
66.39249
  • 66.39249
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
7.37e3
  • 7.37e3
60.11911
  • 60.11911
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
7.44e3
  • 7.44e3
59.72816
  • 59.72816
AEIR
  • AEIR
UBERON:0000080mesonephros
  • UBERON:0000113post-juvenile adult stage
8.10e3
  • 8.10e3
56.12851
  • 56.12851
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
8.17e3
  • 8.17e3
55.76435
  • 55.76435
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • UBERON:0000109gastrula stage
  • UBERON:0000110neurula stage
  • UBERON:0000104life cycle
  • XAO:1000007tailbud stage (Xenopus)
  • XAO:1000080late tailbud stage (Xenopus)
  • XAO:1000041NF stage 25 (Xenopus)
  • UBERON:0000068embryo stage
8.54e3
  • 8.54e3
  • 8.61e3
  • 8.95e3
  • 8.97e3
  • 9.01e3
  • 9.24e3
  • 9.26e3
  • 9.29e3
53.75636
  • 53.75636
  • 53.37888
  • 51.53665
  • 51.43395
  • 51.22707
  • 49.98625
  • 49.84570
  • 49.68327
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
8.90e3
  • 8.90e3
51.83777
  • 51.83777
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

EMBLBC080880, CR848531
EnsemblENSXETG00000007088 (clp1)
Uniprot/SWISSPROTCLP1_XENTR, Q66JK4
XenbaseXB-GENE-1008970 (clp1)

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