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X. tropicalis Gene: rag2 - ENSXETG00000007547 - Xenopus tropicalis (western clawed frog)

General information

Ensembl IDENSXETG00000007547
Namerag2
Descriptionrecombination activating gene 2 [Source:Xenbase;Acc:XB-GENE-1018149]
OrganismXenopus tropicalis (western clawed frog)
Orthologs(s)16 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
1.01e4
  • 1.01e4
45.78
  • 45.78
AEIR
  • AEIR
UBERON:0000307blastula
  • XAO:1000018NF stage 8 (Xenopus)
  • XAO:1000019NF stage 9 (Xenopus)
1.12e4
  • 1.12e4
  • 1.23e4
39.59
  • 39.59
  • 33.76
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:00072368 cell stage
  • UBERON:0000106zygote stage
  • XAO:1000029NF stage 6.5 (Xenopus)
  • UBERON:00072334 cell stage
  • XAO:1000015NF stage 5 (16-cell) (Xenopus)
  • XAO:1000017NF stage 7 (Xenopus)
  • UBERON:00072322 cell stage
  • XAO:1000016NF stage 6 (32-cell) (Xenopus)
  • XAO:1000018NF stage 8 (Xenopus)
  • XAO:1000019NF stage 9 (Xenopus)
  • XAO:1000020NF stage 10 (Xenopus)
  • XAO:1000052NF stage 40 (Xenopus)
  • XAO:1000043NF stage 27 (Xenopus)
  • XAO:1000046NF stage 31 (Xenopus)
  • XAO:1000049NF stage 35 and 36 (Xenopus)
  • XAO:1000045NF stage 29 and 30 (Xenopus)
  • XAO:1000050NF stage 37 and 38 (Xenopus)
  • XAO:1000047NF stage 32 (Xenopus)
  • XAO:1000051NF stage 39 (Xenopus)
  • XAO:1000048NF stage 33 and 34 (Xenopus)
  • XAO:1000041NF stage 25 (Xenopus)
  • XAO:1000042NF stage 26 (Xenopus)
  • XAO:1000044NF stage 28 (Xenopus)
1.13e4
  • 1.13e4
  • 1.13e4
  • 1.14e4
  • 1.15e4
  • 1.18e4
  • 1.21e4
  • 1.23e4
  • 1.24e4
  • 1.26e4
  • 1.35e4
  • 1.46e4
  • 1.53e4
  • 1.54e4
  • 1.55e4
  • 1.55e4
  • 1.55e4
  • 1.55e4
  • 1.58e4
  • 1.59e4
  • 1.59e4
  • 1.60e4
  • 1.62e4
  • 1.65e4
39.35
  • 39.35
  • 38.95
  • 38.48
  • 38.23
  • 36.70
  • 34.86
  • 33.83
  • 33.33
  • 32.11
  • 27.50
  • 21.24
  • 17.68
  • 17.17
  • 16.69
  • 16.67
  • 16.59
  • 16.51
  • 14.82
  • 14.65
  • 14.31
  • 13.78
  • 12.73
  • 11.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.16e4
  • 1.16e4
37.78
  • 37.78
AEIR
  • AEIR
UBERON:0004734gastrula
  • XAO:1000020NF stage 10 (Xenopus)
  • UBERON:0000109gastrula stage
1.18e4
  • 1.18e4
  • 1.68e4
36.54
  • 36.54
  • 9.86
AEIR
  • AEIR
  • AEIR
CL:0000025egg cell
  • UBERON:0000113post-juvenile adult stage
1.20e4
  • 1.20e4
35.69
  • 35.69
AEIR
  • AEIR
UBERON:0000080mesonephros
  • UBERON:0000113post-juvenile adult stage
1.29e4
  • 1.29e4
30.65
  • 30.65
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Tetrapoda15 species15 genesCompare expression
Euteleostomi16 species16 genesCompare expression

Orthology information comes from OMA : ENSXETG00000007547.

Cross-references

EnsemblENSXETG00000007547 (rag2)
XenbaseXB-GENE-1018149 (rag2)
EMBLAAMC01068865
Uniprot/SPTREMBLF6Q0Z9, F6Q0Z9_XENTR

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